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commit: 34e693f2fc0529853c8af20bc738dcda6a4f68c8 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue Jul 12 17:02:43 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue Jul 12 17:02:43 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=34e693f2 |
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|
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sci-biology/ampliconnoise: more ebuild tweaks |
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|
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Package-Manager: portage-2.2.28 |
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|
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sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild | 20 +++++++++++++++++--- |
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1 file changed, 17 insertions(+), 3 deletions(-) |
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|
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diff --git a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild |
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index 40909fd..16af117 100644 |
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--- a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild |
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+++ b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild |
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@@ -1,4 +1,4 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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+# Copyright 1999-2016 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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@@ -14,11 +14,22 @@ SRC_URI=" |
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LICENSE="LGPL-3" |
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SLOT="0" |
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KEYWORDS="" |
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-IUSE="" |
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+IUSE="mpi" |
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+RDEPEND=" |
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+ mpi? ( virtual/mpi ) |
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+ sci-libs/gsl |
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+ sci-biology/mafft |
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+ sci-biology/usearch-bin |
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+ dev-haskell/biosff || ( sci-biology/flower )" |
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+ # sci-biology/flower::haskell installs renamed binaries to avoid file collision |
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+ # unfortunately flower executable from the two packages |
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+ # dev-haskell/biosff::science vs. sci-biology/flower::haskell |
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+ # do not offer same cmdline options (upstream did not sync the two packages) |
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|
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S="${WORKDIR}/AmpliconNoiseV1.27" |
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|
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src_compile(){ |
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+ # FIXME: the Makefile forcibly calls 'mpicc' |
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emake |
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cd ../DiversityEstimates || die |
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emake |
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@@ -26,5 +37,8 @@ src_compile(){ |
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|
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src_install(){ |
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default |
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- dodoc "${WORKDIR}"/TutorialV1.22/Tutorial.ppt "${WORKDIR}"/TutorialV1.22/SmallTwins.* |
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+ dodoc "${WORKDIR}"/TutorialV1.22/Tutorial.ppt "${WORKDIR}"/TutorialV1.22/SmallTwins.* Doc.pdf |
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+ mv bin "${DESTDIR}/${EPREFIX}"/usr/ || die |
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+ insinto /usr/share/"${PN}"/scripts |
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+ doins Scripts/*.pl Scripts/*.sh |
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} |
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