[gentoo-commits] proj/sci:master commit in: sci-biology/scaffold_builder/

[Martin Mokrejs]

commit:     f90c619958049fd0417d0a27d42cf521e78bd8a9
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan 30 12:46:25 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan 30 12:46:25 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f90c6199

version bump

Package-Manager: portage-2.2.15

---
 sci-biology/scaffold_builder/ChangeLog                  |  8 +++++++-
 ...20130403.ebuild => scaffold_builder-20131122.ebuild} | 17 +++++++++--------
 2 files changed, 16 insertions(+), 9 deletions(-)

diff --git a/sci-biology/scaffold_builder/ChangeLog b/sci-biology/scaffold_builder/ChangeLog
index 1dec7cf..5663f61 100644
--- a/sci-biology/scaffold_builder/ChangeLog
+++ b/sci-biology/scaffold_builder/ChangeLog
@@ -1,7 +1,13 @@
 # ChangeLog for sci-biology/scaffold_builder
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*scaffold_builder-20131122 (30 Jan 2015)
+
+  30 Jan 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  +scaffold_builder-20131122.ebuild, -scaffold_builder-20130403.ebuild:
+  version bump
+
   16 Sep 2014; Christoph Junghans <ottxor@g.o>
   scaffold_builder-20130403.ebuild:
   added license

diff --git a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild b/sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild
similarity index 64%
rename from sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild
rename to sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild
index 9a4446d..dc14a4d 100644
--- a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild
+++ b/sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -8,14 +8,14 @@ S="${WORKDIR}"
 
 DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds using a reference assembly"
 HOMEPAGE="http://sourceforge.net/projects/scaffold-b/"
-SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.py
+SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.1.zip
 	http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc
 	http://downloads.sourceforge.net/project/scaffold-b/Manual_v2.1.pdf"
 
 #http://www.scfbm.org/content/8/1/23
 LICENSE="CC-BY-2.0"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
 IUSE=""
 
 DEPEND=""
@@ -23,10 +23,11 @@ RDEPEND="${DEPEND}
 	dev-lang/python"
 
 src_install(){
-	echo "#! /usr/bin/env python" > scaffold_builder_v2.py || die
-	cat "${DISTDIR}"/scaffold_builder_v2.py >> scaffold_builder_v2.py || die
-	dobin scaffold_builder_v2.py
+	echo "#! /usr/bin/env python" > scaffold_builder.pyy || die
+	cat scaffold_builder.py >> scaffold_builder.pyy || die
+	mv scaffold_builder.pyy scaffold_builder.py || die
+	dobin scaffold_builder.py
 	dodoc "${DISTDIR}"/scaffold_builder_v2_help.doc
-	cp "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder_v2_Manual.pdf || die
-	dodoc scaffold_builder_v2_Manual.pdf
+	cp -p "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder.pdf || die
+	dodoc scaffold_builder.pdf
 }