[gentoo-commits] proj/sci:master commit in: sci-biology/Trinotate/

[Andrew Ammerlaan]

commit:     28a4553de32754b0a5bba92424537bb31bd72e1f
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Feb  1 09:14:09 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Feb  1 09:14:09 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=28a4553d

sci-biology/Trinotate: version bump 3.2.1

no keywords, because dep trinityrnaseq is missing them

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 ...{Trinotate-2.0.1.ebuild => Trinotate-3.2.1.ebuild} | 19 ++++++++++---------
 1 file changed, 10 insertions(+), 9 deletions(-)

diff --git a/sci-biology/Trinotate/Trinotate-2.0.1.ebuild b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild
similarity index 71%
rename from sci-biology/Trinotate/Trinotate-2.0.1.ebuild
rename to sci-biology/Trinotate/Trinotate-3.2.1.ebuild
index 13dd775aa..85807d4a0 100644
--- a/sci-biology/Trinotate/Trinotate-2.0.1.ebuild
+++ b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild
@@ -1,25 +1,24 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
-PERL_EXPORT_PHASE_FUNCTIONS=no
-inherit perl-module eutils toolchain-funcs
+inherit perl-module toolchain-funcs
 
 DESCRIPTION="Annotation and analysis pipeline for de novo assembled transcriptomes"
-HOMEPAGE="http://trinotate.github.io"
-SRC_URI="https://github.com/Trinotate/Trinotate/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+HOMEPAGE="https://github.com/Trinotate/Trinotate.github.io/wiki"
+SRC_URI="https://github.com/Trinotate/Trinotate/archive/${PN}-v${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="BSD-BroadInstitute"
 SLOT="0"
 KEYWORDS=""
-IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}
 	sci-biology/ncbi-tools++
 	sci-biology/trinityrnaseq
-	sci-biology/TransDecoder"
+	sci-biology/TransDecoder
+"
 
 # http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer
 # >=sci-biology/rnammer-2.3.2
@@ -33,12 +32,14 @@ RDEPEND="${DEPEND}
 # In the 'rnammer' software configuration, edit the rnammer script to point
 # $HMMSEARCH_BINARY = "/path/to/hmmsearch2";
 
+S="${WORKDIR}/${PN}-${PN}-v${PV}"
+
 src_install(){
 	perl_set_version
 	dobin Trinotate
 	insinto /usr/share/"${PN}"
-	doins -r admin java sample_data util TrinotateWeb
+	doins -r admin sample_data util TrinotateWeb
 	insinto ${VENDOR_LIB}/${PN}
 	doins -r PerlLib/*
-	dodoc Release.Notes
+	dodoc notes README.md README.txt Changelog.txt
 }