[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/reduce/, sci-chemistry/reduce/files/

[Matt Turner]

commit:     a3ffd565b7bbfa3491aa1c554fa15c10ad23265d
Author:     Matt Turner <mattst88 <AT> gentoo <DOT> org>
AuthorDate: Sat Aug 10 04:03:21 2019 +0000
Commit:     Matt Turner <mattst88 <AT> gentoo <DOT> org>
CommitDate: Sat Aug 10 04:05:35 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a3ffd565

sci-chemistry/reduce: Remove

Closes: https://bugs.gentoo.org/639760
Signed-off-by: Matt Turner <mattst88 <AT> gentoo.org>

 sci-chemistry/reduce/Manifest                      |  1 -
 .../reduce/files/3.13.080428-LDFLAGS.patch         | 11 -----
 .../reduce/files/3.14.080821-CFLAGS.patch          | 22 ----------
 .../files/reduce-3.16.111118-fix-c++14.patch       | 14 -------
 sci-chemistry/reduce/metadata.xml                  |  8 ----
 sci-chemistry/reduce/reduce-3.16.111118.ebuild     | 49 ----------------------
 6 files changed, 105 deletions(-)

diff --git a/sci-chemistry/reduce/Manifest b/sci-chemistry/reduce/Manifest
deleted file mode 100644
index 6f59e8193a4..00000000000
--- a/sci-chemistry/reduce/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST reduce.3.16.111118.src.zip 20342632 BLAKE2B 8c00e4ca881680404777cb788a0f6b4a5a0683ee33492c0050e503ce765d68117159bafded0f04c76f35ebd2f69fafbe471ff9798bea722be6d1585d128dae61 SHA512 f7b4d8d91f1f57e9e96c91139fa919c570aebd07f3a440faf3df54bf5deb3a05ad998996a24b5fe9aff6280e00329c9914e338cbfe802c047c055f52ce8312a9

diff --git a/sci-chemistry/reduce/files/3.13.080428-LDFLAGS.patch b/sci-chemistry/reduce/files/3.13.080428-LDFLAGS.patch
deleted file mode 100644
index a615be088b2..00000000000
--- a/sci-chemistry/reduce/files/3.13.080428-LDFLAGS.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/reduce_src/Makefile
-+++ b/reduce_src/Makefile
-@@ -34,7 +34,7 @@
- all:    reduce
- 
- reduce: $(OBJLIST)
--	$(CXX) -o $@ $(OBJLIST) $(LFLAGS)
-+	$(CXX) $(LDFLAGS) -o $@ $(OBJLIST) $(LFLAGS)
- 
- clean:
- 	@rm -rf *.o *.ckp ii_files

diff --git a/sci-chemistry/reduce/files/3.14.080821-CFLAGS.patch b/sci-chemistry/reduce/files/3.14.080821-CFLAGS.patch
deleted file mode 100644
index 8294c8ca385..00000000000
--- a/sci-chemistry/reduce/files/3.14.080821-CFLAGS.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-diff --git a/reduce_src/Makefile b/reduce_src/Makefile
-index 598e367..067ace4 100644
---- a/reduce_src/Makefile
-+++ b/reduce_src/Makefile
-@@ -12,7 +12,7 @@ PROG_FLGS   = -DAROMATICS_ACCEPT_HBONDS \
- #              -DDEBUGMOVABLENODE -DDEBUGDOTCOUNTS
- #              -DMINPREDEFINED -DMAXPREDEFINED\
- 
--CFLAGS = $(OPT) $(DEBUG) $(PROG_FLGS) $(DICT_LOC) $(DICT_LOCOLD)\
-+CXXFLAGS = $(OPT) $(DEBUG) $(PROG_FLGS) $(DICT_LOC) $(DICT_LOCOLD)\
-          -I$(PDBHOME) -I$(TOOLHOME) 
- #         -Wall
- 
-@@ -26,7 +26,7 @@ OBJLIST = GraphToHoldScores.o reduce.o CTab.o ElementInfo.o StdResH.o ResBlk.o A
- CXX		= g++
- 
- .cpp.o:
--	$(CXX) -c $*.cpp $(CFLAGS)
-+	$(CXX) -c $*.cpp $(CXXFLAGS)
- 
- OPT             = -O3
- DEBUG           = $(CXXDEBUGFLAGS)

diff --git a/sci-chemistry/reduce/files/reduce-3.16.111118-fix-c++14.patch b/sci-chemistry/reduce/files/reduce-3.16.111118-fix-c++14.patch
deleted file mode 100644
index 5a45b7cef49..00000000000
--- a/sci-chemistry/reduce/files/reduce-3.16.111118-fix-c++14.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-Fix building with C++14, which errors out due to an erroneous std::cerr.
-See also: https://bugs.gentoo.org/show_bug.cgi?id=594202
-
---- a/reduce_src/GraphToHoldScores.cpp
-+++ b/reduce_src/GraphToHoldScores.cpp
-@@ -1150,7 +1150,7 @@
- 		}
- 	}
- 	std::cerr << "CRITICAL ERROR IN whichVertex(" << vertex_index << ") called on edge [" <<
--	std::cerr << vertex_indices_[ 0 ] << ", " << vertex_indices_[ 1 ] << "]" << std::endl;
-+		vertex_indices_[ 0 ] << ", " << vertex_indices_[ 1 ] << "]" << std::endl;
- 	assert(false);
- 	exit(1);
-         return 0; // to avoid warnings

diff --git a/sci-chemistry/reduce/metadata.xml b/sci-chemistry/reduce/metadata.xml
deleted file mode 100644
index da36ecbfcd6..00000000000
--- a/sci-chemistry/reduce/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-chemistry@g.o</email>
-		<name>Gentoo Chemistry Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-chemistry/reduce/reduce-3.16.111118.ebuild b/sci-chemistry/reduce/reduce-3.16.111118.ebuild
deleted file mode 100644
index ef1349e6ade..00000000000
--- a/sci-chemistry/reduce/reduce-3.16.111118.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit toolchain-funcs
-
-MY_P="${PN}.${PV}.src"
-
-DESCRIPTION="Adds hydrogens to a Protein Data Bank (PDB) molecule structure file"
-HOMEPAGE="http://kinemage.biochem.duke.edu/software/reduce.php"
-SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/reduce31/${MY_P}.zip"
-
-LICENSE="richardson"
-SLOT="0"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND=""
-DEPEND="${RDEPEND}
-	app-arch/unzip"
-
-S="${WORKDIR}/"
-PATCHES=(
-	"${FILESDIR}"/3.13.080428-LDFLAGS.patch
-	"${FILESDIR}"/3.14.080821-CFLAGS.patch
-	"${FILESDIR}"/${PN}-3.16.111118-fix-c++14.patch
-)
-
-src_compile() {
-	DICT_DIR="/usr/share/reduce"
-	DICT_FOLD="reduce_het_dict.txt"
-	DICT_FNEW="reduce_wwPDB_het_dict.txt"
-
-	emake clean
-	emake \
-		CC="$(tc-getCC)" \
-		CXX="$(tc-getCXX)" \
-		OPT="${CXXFLAGS}" \
-		DICT_HOME="${EPREFIX}/${DICT_DIR}/${DICT_FNEW}" \
-		DICT_OLD="${EPREFIX}/${DICT_DIR}/${DICT_FOLD}"
-}
-
-src_install() {
-	dobin "${S}"/reduce_src/reduce
-	insinto ${DICT_DIR}
-	doins "${S}"/${DICT_FOLD} "${S}"/${DICT_FNEW}
-	dodoc README.usingReduce.txt
-}