[gentoo-commits] proj/sci:master commit in: sci-mathematics/dolfin/, sci-mathematics/dolfin/files/

[Horea Christian]

commit:     d51c2ced7b3d8950894746f66da1c07712a00feb
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Sep 29 06:39:20 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Sep 29 06:39:20 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d51c2ced

sci-mathematics/dolfin: removed package with missing dep

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-mathematics/dolfin/dolfin-0.9.9.ebuild         | 56 ---------------
 sci-mathematics/dolfin/dolfin-2016.2.0-r2.ebuild   | 80 ----------------------
 sci-mathematics/dolfin/dolfin-2017.1.0.ebuild      | 80 ----------------------
 .../dolfin/files/dolfin-0.9.9-find-armadillo.patch | 25 -------
 .../files/dolfin-2016.2.0-trilinos-superlu.patch   | 21 ------
 sci-mathematics/dolfin/metadata.xml                | 26 -------
 6 files changed, 288 deletions(-)

diff --git a/sci-mathematics/dolfin/dolfin-0.9.9.ebuild b/sci-mathematics/dolfin/dolfin-0.9.9.ebuild
deleted file mode 100644
index 4677e51b2..000000000
--- a/sci-mathematics/dolfin/dolfin-0.9.9.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit cmake-utils eutils python-single-r1
-
-DESCRIPTION="C++/Python interface of FEniCS"
-HOMEPAGE="https://launchpad.net/dolfin/"
-SRC_URI="https://launchpad.net/${PN}/0.x/${PV}/+download/${P}.tar.gz"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="cgal cholmod gmp mpi parmetis python scotch umfpack zlib"
-# scotch and parmetis require mpi; wait for EAPI 4
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-DEPEND="
-	dev-libs/boost
-	dev-libs/libxml2:2
-	sci-libs/armadillo
-	sci-mathematics/ufc
-	python? (
-		${PYTHON_DEPS}
-		dev-python/ufl[${PYTHON_USEDEP}]
-		dev-python/ffc[${PYTHON_USEDEP}]
-		dev-python/fiat[${PYTHON_USEDEP}]
-		dev-python/instant[${PYTHON_USEDEP}]
-		dev-python/viper[${PYTHON_USEDEP}]
-		)"
-RDEPEND="${DEPEND}"
-
-pkg_setup() {
-	use python && python-single-r1_pkg_setup
-}
-
-src_prepare() {
-	epatch "${FILESDIR}"/"${P}"-find-armadillo.patch
-}
-
-pkg_setup() {
-	mycmakeargs="${mycmakeargs}
-		$(cmake-utils_use cgal DOLFIN_ENABLE_CGAL)
-		$(cmake-utils_use cholmod DOLFIN_ENABLE_CHOLMOD)
-		$(cmake-utils_use gmp DOLFIN_ENABLE_GMP)
-		$(cmake-utils_use mpi DOLFIN_ENABLE_MPI)
-		$(cmake-utils_use parmetis DOLFIN_ENABLE_PARMETIS)
-		$(cmake-utils_use python DOLFIN_ENABLE_PYTHON)
-		$(cmake-utils_use scotch DOLFIN_ENABLE_SCOTCH)
-		$(cmake-utils_use umfpack DOLFIN_ENABLE_UMFPACK)
-		$(cmake-utils_use zlib DOLFIN_ENABLE_ZLIB)"
-}

diff --git a/sci-mathematics/dolfin/dolfin-2016.2.0-r2.ebuild b/sci-mathematics/dolfin/dolfin-2016.2.0-r2.ebuild
deleted file mode 100644
index 169611161..000000000
--- a/sci-mathematics/dolfin/dolfin-2016.2.0-r2.ebuild
+++ /dev/null
@@ -1,80 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit cmake-utils eutils python-single-r1
-
-DESCRIPTION="C++/Python interface of FEniCS"
-HOMEPAGE="https://bitbucket.org/fenics-project/dolfin"
-SRC_URI="https://bitbucket.org/fenics-project/${PN}/downloads/${P}.tar.gz"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="hdf5 mpi parmetis petsc scotch trilinos umfpack zlib vtk"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}
-	trilinos? ( mpi )"
-
-# Yes, swig is an RDEPEND
-DEPEND="
-	${PYTHON_DEPS}
-	dev-cpp/eigen:3
-	dev-lang/swig
-	dev-libs/boost:=
-	dev-libs/libxml2:2
-	~dev-python/dijitso-${PV}[${PYTHON_USEDEP}]
-	~dev-python/ffc-${PV}[${PYTHON_USEDEP}]
-	~dev-python/fiat-${PV}[${PYTHON_USEDEP}]
-	~dev-python/instant-${PV}[${PYTHON_USEDEP}]
-	dev-python/sympy
-	~dev-python/ufl-${PV}[${PYTHON_USEDEP}]
-	virtual/blas
-	virtual/lapack
-	hdf5? ( sci-libs/hdf5[mpi=] )
-	mpi? ( virtual/mpi )
-	parmetis? ( sci-libs/parmetis[mpi(+)] )
-	petsc? ( sci-mathematics/petsc[mpi=] )
-	sci-libs/armadillo
-	scotch? ( sci-libs/scotch )
-	trilinos? ( sci-libs/trilinos )
-	umfpack? (
-		sci-libs/amd
-		sci-libs/cholmod
-		sci-libs/umfpack
-	)
-	vtk? ( sci-libs/vtk )
-	zlib? ( sys-libs/zlib )"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
-	"${FILESDIR}"/${P}-trilinos-superlu.patch
-)
-
-pkg_setup() {
-	python-single-r1_pkg_setup
-}
-
-src_configure() {
-	# *sigh*
-	addpredict /proc/mtrr
-	addpredict /sys/devices/system/cpu/
-
-	mycmakeargs=(
-		-DDOLFIN_ENABLE_CHOLMOD="$(usex umfpack)"
-		-DDOLFIN_ENABLE_HDF5="$(usex hdf5)"
-		-DDOLFIN_ENABLE_MPI="$(usex mpi)"
-		-DDOLFIN_ENABLE_PARMETIS="$(usex parmetis)"
-		-DDOLFIN_ENABLE_PETSC="$(usex petsc)"
-		-DDOLFIN_ENABLE_PYTHON="yes"
-		-DDOLFIN_ENABLE_SCOTCH="$(usex scotch)"
-		-DDOLFIN_ENABLE_TRILINOS="$(usex trilinos)"
-		-DDOLFIN_ENABLE_UMFPACK="$(usex umfpack)"
-		-DDOLFIN_ENABLE_VTK="$(usex vtk)"
-		-DDOLFIN_ENABLE_ZLIB="$(usex zlib)"
-	)
-	cmake-utils_src_configure
-}

diff --git a/sci-mathematics/dolfin/dolfin-2017.1.0.ebuild b/sci-mathematics/dolfin/dolfin-2017.1.0.ebuild
deleted file mode 100644
index b5b66a708..000000000
--- a/sci-mathematics/dolfin/dolfin-2017.1.0.ebuild
+++ /dev/null
@@ -1,80 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_4 python3_5 python3_6 )
-
-inherit cmake-utils eutils python-single-r1
-
-DESCRIPTION="C++/Python interface of FEniCS"
-HOMEPAGE="https://bitbucket.org/fenics-project/dolfin"
-SRC_URI="https://bitbucket.org/fenics-project/${PN}/downloads/${P}.tar.gz"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="hdf5 mpi parmetis petsc scotch trilinos umfpack zlib vtk"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}
-	trilinos? ( mpi )"
-
-# Yes, swig is an RDEPEND
-DEPEND="
-	${PYTHON_DEPS}
-	dev-cpp/eigen:3
-	dev-lang/swig
-	dev-libs/boost:=
-	dev-libs/libxml2:2
-	~dev-python/dijitso-${PV}[${PYTHON_USEDEP}]
-	~dev-python/ffc-${PV}[${PYTHON_USEDEP}]
-	~dev-python/fiat-${PV}[${PYTHON_USEDEP}]
-	~dev-python/instant-${PV}[${PYTHON_USEDEP}]
-	dev-python/sympy
-	~dev-python/ufl-${PV}[${PYTHON_USEDEP}]
-	virtual/blas
-	virtual/lapack
-	hdf5? ( sci-libs/hdf5[mpi=] )
-	mpi? ( virtual/mpi )
-	parmetis? ( sci-libs/parmetis[mpi(+)] )
-	petsc? ( sci-mathematics/petsc[mpi=] )
-	sci-libs/armadillo
-	scotch? ( sci-libs/scotch )
-	trilinos? ( sci-libs/trilinos )
-	umfpack? (
-		sci-libs/amd
-		sci-libs/cholmod
-		sci-libs/umfpack
-	)
-	vtk? ( sci-libs/vtk )
-	zlib? ( sys-libs/zlib )"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-2016.2.0-trilinos-superlu.patch
-)
-
-pkg_setup() {
-	python-single-r1_pkg_setup
-}
-
-src_configure() {
-	# *sigh*
-	addpredict /proc/mtrr
-	addpredict /sys/devices/system/cpu/
-
-	mycmakeargs=(
-		-DDOLFIN_ENABLE_CHOLMOD="$(usex umfpack)"
-		-DDOLFIN_ENABLE_HDF5="$(usex hdf5)"
-		-DDOLFIN_ENABLE_MPI="$(usex mpi)"
-		-DDOLFIN_ENABLE_PARMETIS="$(usex parmetis)"
-		-DDOLFIN_ENABLE_PETSC="$(usex petsc)"
-		-DDOLFIN_ENABLE_PYTHON="yes"
-		-DDOLFIN_ENABLE_SCOTCH="$(usex scotch)"
-		-DDOLFIN_ENABLE_TRILINOS="$(usex trilinos)"
-		-DDOLFIN_ENABLE_UMFPACK="$(usex umfpack)"
-		-DDOLFIN_ENABLE_VTK="$(usex vtk)"
-		-DDOLFIN_ENABLE_ZLIB="$(usex zlib)"
-	)
-	cmake-utils_src_configure
-}

diff --git a/sci-mathematics/dolfin/files/dolfin-0.9.9-find-armadillo.patch b/sci-mathematics/dolfin/files/dolfin-0.9.9-find-armadillo.patch
deleted file mode 100644
index 677a78aab..000000000
--- a/sci-mathematics/dolfin/files/dolfin-0.9.9-find-armadillo.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-diff -Naur a/cmake/modules/FindArmadillo.cmake b/cmake/modules/FindArmadillo.cmake
---- a/cmake/modules/FindArmadillo.cmake	2010-09-02 02:49:57.000000000 +0200
-+++ b/cmake/modules/FindArmadillo.cmake	2010-12-15 14:21:34.810300165 +0100
-@@ -95,8 +95,8 @@
- #include <armadillo>
- int main()
- {
-- arma::mat A = arma::rand(4, 4);
-- arma::vec b = arma::rand(4);
-+ arma::mat A = arma::randu(4, 4);
-+ arma::vec b = arma::randu(4);
-  arma::vec x = arma::solve(A, b);
-  return 0;
- }
-@@ -112,8 +112,8 @@
- #include <armadillo>
- int main()
- {
-- arma::mat A = arma::rand(4, 4);
-- arma::vec b = arma::rand(4);
-+ arma::mat A = arma::randu(4, 4);
-+ arma::vec b = arma::randu(4);
-  arma::vec x = arma::solve(A, b);
-  return 0;
- }

diff --git a/sci-mathematics/dolfin/files/dolfin-2016.2.0-trilinos-superlu.patch b/sci-mathematics/dolfin/files/dolfin-2016.2.0-trilinos-superlu.patch
deleted file mode 100644
index 7282766fe..000000000
--- a/sci-mathematics/dolfin/files/dolfin-2016.2.0-trilinos-superlu.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-diff --git a/dolfin/CMakeLists.txt b/dolfin/CMakeLists.txt
-index 26bc21a..0caf7ca 100644
---- a/dolfin/CMakeLists.txt
-+++ b/dolfin/CMakeLists.txt
-@@ -2,6 +2,7 @@ set(DOLFIN_H dolfin.h)
- install(FILES ${DOLFIN_H} DESTINATION ${DOLFIN_INCLUDE_DIR}
-   COMPONENT Development)
- 
-+
- # Configure and install dolfin/common/version.h file
- string(REPLACE "+" "" DOLFIN_VERSION_MICRO_STRIPPED ${DOLFIN_VERSION_MICRO})
- configure_file(${DOLFIN_SOURCE_DIR}/dolfin/common/version.h.in
-@@ -12,6 +13,8 @@ install(FILES ${CMAKE_BINARY_DIR}/dolfin/common/version.h
-   )
- include_directories(${CMAKE_BINARY_DIR})
- 
-+include_directories(/usr/include/superlu)
-+
- #------------------------------------------------------------------------------
- # DOLFIN source directories
- 

diff --git a/sci-mathematics/dolfin/metadata.xml b/sci-mathematics/dolfin/metadata.xml
deleted file mode 100644
index 26a0480f0..000000000
--- a/sci-mathematics/dolfin/metadata.xml
+++ /dev/null
@@ -1,26 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-mathematics@g.o</email>
-		<name>Gentoo Mathematics Project</name>
-	</maintainer>
-	<longdescription lang="en">
-DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Problem Solving Environment) for ordinary and partial differential equations.
-</longdescription>
-	<use>
-		<flag name="cgal">Adds support for geometric algorithms with <pkg>sci-mathematics/cgal</pkg></flag>
-		<flag name="cholmod">Adds support for sparse Cholesky factorization with <pkg>sci-libs/cholmod</pkg></flag>
-		<flag name="hdf5">Adds support for <pkg>sci-libs/hdf5</pkg></flag>
-		<flag name="parmetis">Adds support for parallel graph partitioning with <pkg>sci-libs/parmetis</pkg></flag>
-		<flag name="petsc">Adds support for numerical linear algebra toolkit <pkg>sci-mathematics/petsc</pkg></flag>
-		<flag name="scotch">Adds support for graph partitioning with <pkg>sci-libs/scotch</pkg></flag>
-		<flag name="trilinos">Adds support for numerical linear algebra toolkit  <pkg>sci-libs/trilinos</pkg></flag>
-		<flag name="umfpack">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag>
-		<flag name="vtk">Adds support for the visualization toolkit <pkg>sci-libs/vtk</pkg></flag>
-	</use>
-	<upstream>
-		<remote-id type="bitbucket">fenics-project/dolfin</remote-id>
-		<remote-id type="launchpad">dolfin</remote-id>
-	</upstream>
-</pkgmetadata>