[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/files/, sci-chemistry/gromacs/

[Alexey Shvetsov]

commit:     3be10d9efadf209bd58dc917671b4584c49824a6
Author:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 21 16:33:29 2022 +0000
Commit:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Mon Feb 21 16:36:36 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3be10d9e

sci-chemistry/gromacs: Fix build for musl

Closes: https://bugs.gentoo.org/828673

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>

 .../gromacs/files/gromacs-2021-musl-stdint.patch   | 25 ++++++++++++++++++++++
 sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild     |  2 ++
 sci-chemistry/gromacs/gromacs-2021.5.ebuild        |  2 ++
 3 files changed, 29 insertions(+)

diff --git a/sci-chemistry/gromacs/files/gromacs-2021-musl-stdint.patch b/sci-chemistry/gromacs/files/gromacs-2021-musl-stdint.patch
new file mode 100644
index 000000000000..c94fc5598f91
--- /dev/null
+++ b/sci-chemistry/gromacs/files/gromacs-2021-musl-stdint.patch
@@ -0,0 +1,25 @@
+From 8a38303c52fbca07c850e0c4cd03a783aabf9e49 Mon Sep 17 00:00:00 2001
+From: Paul Bauer <paul.bauer.q@×××××.com>
+Date: Mon, 21 Feb 2022 09:53:46 +0100
+Subject: [PATCH] Fix missing includes for musl libc
+
+Fixes #4404
+---
+ src/gromacs/math/vectypes.h | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/src/gromacs/math/vectypes.h b/src/gromacs/math/vectypes.h
+index d4d5211d11..bd9d31de20 100644
+--- a/src/gromacs/math/vectypes.h
++++ b/src/gromacs/math/vectypes.h
+@@ -40,6 +40,7 @@
+ 
+ #include <cassert>
+ #include <cmath>
++#include <cstdint>
+ 
+ #include <algorithm>
+ #include <type_traits>
+-- 
+2.35.1
+

diff --git a/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild b/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
index 304523f0caed..9ebdeb01146c 100644
--- a/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
@@ -83,6 +83,8 @@ DOCS=( AUTHORS README )
 
 RESTRICT="!test? ( test )"
 
+PATCHES=( "${FILESDIR}/${PN}-2021-musl-stdint.patch" )
+
 if [[ ${PV} != *9999 ]]; then
 	S="${WORKDIR}/${PN}-${PV/_/-}"
 fi

diff --git a/sci-chemistry/gromacs/gromacs-2021.5.ebuild b/sci-chemistry/gromacs/gromacs-2021.5.ebuild
index d9c7e8a5269e..abf5ed8ec5ef 100644
--- a/sci-chemistry/gromacs/gromacs-2021.5.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.5.ebuild
@@ -83,6 +83,8 @@ DOCS=( AUTHORS README )
 
 RESTRICT="!test? ( test )"
 
+PATCHES=( "${FILESDIR}/${PN}-2021-musl-stdint.patch" )
+
 if [[ ${PV} != *9999 ]]; then
 	S="${WORKDIR}/${PN}-${PV/_/-}"
 fi