[gentoo-commits] gentoo-x86 commit in sci-biology/plink/files: 1.07-flags.patch

[Justin Lecher (jlec)]

jlec        10/11/26 13:57:27

  Added:                1.07-flags.patch
  Log:
  Fixes for #335975, respecting LDFLAGS/CXXFLAGS, supporting lapack, making R support optional
  
  (Portage version: 2.2.0_alpha5/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-biology/plink/files/1.07-flags.patch

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/files/1.07-flags.patch?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/files/1.07-flags.patch?rev=1.1&content-type=text/plain

Index: 1.07-flags.patch
===================================================================
diff --git a/Makefile b/Makefile
index 172c795..466f09f 100644
--- a/Makefile
+++ b/Makefile
@@ -26,25 +26,25 @@ WITH_R_PLUGINS = 1
 WITH_WEBCHECK = 1
 FORCE_32BIT = 
 WITH_ZLIB = 1
-WITH_LAPACK = 
-FORCE_DYNAMIC = 
+WITH_LAPACK = 1
+FORCE_DYNAMIC = 1
 
 # Put C++ compiler here; Windows has it's own specific version
 CXX_UNIX = g++
 CXX_WIN = c:\bin\mingw\bin\mingw32-g++.exe
 
 # Any other compiler flags here ( -Wall, -g, etc)
-CXXFLAGS = 
+CXXFLAGS ?= -O2
 
 # Misc
-LIB_LAPACK = /usr/lib/liblapack.so.3
+LIB_LAPACK = `pkg-config --libs lapack`
 
 
 # --------------------------------------------------------------------
 # Do not edit below this line
 # --------------------------------------------------------------------
 
-CXXFLAGS += -O3 -I.
+CXXFLAGS += -I.
 OUTPUT = plink
 
 # Some system specific flags
@@ -151,7 +151,7 @@ OBJ = $(SRC:.cpp=.o)
 all : $(OUTPUT) 
 
 $(OUTPUT) :
-	$(CXX) $(CXXFLAGS) -o $(OUTPUT) $(OBJ) $(LIB) 
+	$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $(OUTPUT) $(OBJ) $(LIB) 
 
 $(OBJ) : $(HDR)