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From: "Justin Lecher (jlec)" <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/abyss: abyss-1.2.3.ebuild ChangeLog abyss-1.2.7.ebuild
Date: Thu, 28 Apr 2011 15:01:16
Message-Id: 20110428150105.B582F20054@flycatcher.gentoo.org
1 jlec 11/04/28 15:01:05
2
3 Modified: abyss-1.2.3.ebuild ChangeLog abyss-1.2.7.ebuild
4 Log:
5 Added openmp USE
6
7 (Portage version: 2.2.0_alpha30/cvs/Linux x86_64)
8
9 Revision Changes Path
10 1.4 sci-biology/abyss/abyss-1.2.3.ebuild
11
12 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild?rev=1.4&view=markup
13 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild?rev=1.4&content-type=text/plain
14 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild?r1=1.3&r2=1.4
15
16 Index: abyss-1.2.3.ebuild
17 ===================================================================
18 RCS file: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v
19 retrieving revision 1.3
20 retrieving revision 1.4
21 diff -u -r1.3 -r1.4
22 --- abyss-1.2.3.ebuild 11 Feb 2011 13:04:19 -0000 1.3
23 +++ abyss-1.2.3.ebuild 28 Apr 2011 15:01:05 -0000 1.4
24 @@ -1,11 +1,12 @@
25 # Copyright 1999-2011 Gentoo Foundation
26 # Distributed under the terms of the GNU General Public License v2
27 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v 1.3 2011/02/11 13:04:19 hwoarang Exp $
28 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v 1.4 2011/04/28 15:01:05 jlec Exp $
29
30 EAPI="2"
31
32 +
33 DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
34 -HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
35 +HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
36 SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
37
38 LICENSE="abyss"
39 @@ -13,13 +14,18 @@
40 IUSE="+mpi"
41 KEYWORDS="amd64 x86"
42
43 -DEPEND="dev-cpp/sparsehash
44 +DEPEND="
45 + dev-cpp/sparsehash
46 mpi? ( virtual/mpi )"
47 RDEPEND="${DEPEND}"
48
49 # todo: --enable-maxk=N configure option
50 # todo: fix automagic mpi toggling
51
52 +src_prepare() {
53 + sed 's:-Werror::g' -i configure || die
54 +}
55 +
56 src_install() {
57 einstall || die
58 }
59
60
61
62 1.10 sci-biology/abyss/ChangeLog
63
64 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/ChangeLog?rev=1.10&view=markup
65 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/ChangeLog?rev=1.10&content-type=text/plain
66 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/ChangeLog?r1=1.9&r2=1.10
67
68 Index: ChangeLog
69 ===================================================================
70 RCS file: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v
71 retrieving revision 1.9
72 retrieving revision 1.10
73 diff -u -r1.9 -r1.10
74 --- ChangeLog 28 Apr 2011 14:04:23 -0000 1.9
75 +++ ChangeLog 28 Apr 2011 15:01:05 -0000 1.10
76 @@ -1,6 +1,10 @@
77 # ChangeLog for sci-biology/abyss
78 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
79 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.9 2011/04/28 14:04:23 xarthisius Exp $
80 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.10 2011/04/28 15:01:05 jlec Exp $
81 +
82 + 28 Apr 2011; Justin Lecher <jlec@g.o> abyss-1.2.3.ebuild,
83 + abyss-1.2.7.ebuild:
84 + Added openmp USE
85
86 *abyss-1.2.7 (28 Apr 2011)
87
88
89
90
91 1.2 sci-biology/abyss/abyss-1.2.7.ebuild
92
93 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild?rev=1.2&view=markup
94 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild?rev=1.2&content-type=text/plain
95 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild?r1=1.1&r2=1.2
96
97 Index: abyss-1.2.7.ebuild
98 ===================================================================
99 RCS file: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v
100 retrieving revision 1.1
101 retrieving revision 1.2
102 diff -u -r1.1 -r1.2
103 --- abyss-1.2.7.ebuild 28 Apr 2011 14:04:23 -0000 1.1
104 +++ abyss-1.2.7.ebuild 28 Apr 2011 15:01:05 -0000 1.2
105 @@ -1,26 +1,25 @@
106 # Copyright 1999-2011 Gentoo Foundation
107 # Distributed under the terms of the GNU General Public License v2
108 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v 1.1 2011/04/28 14:04:23 xarthisius Exp $
109 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v 1.2 2011/04/28 15:01:05 jlec Exp $
110
111 -EAPI="2"
112 +EAPI="4"
113
114 -inherit autotools base
115 +inherit autotools
116
117 DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
118 -HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
119 +HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
120 SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
121
122 LICENSE="abyss"
123 SLOT="0"
124 -IUSE="+mpi"
125 -KEYWORDS="~amd64 ~x86"
126 +IUSE="+mpi openmp"
127 +KEYWORDS="amd64 x86"
128
129 -DEPEND="dev-cpp/sparsehash
130 +DEPEND="
131 + dev-cpp/sparsehash
132 mpi? ( virtual/mpi )"
133 RDEPEND="${DEPEND}"
134
135 -DOCS=( ChangeLog README )
136 -
137 # todo: --enable-maxk=N configure option
138 # todo: fix automagic mpi toggling
139
140 @@ -29,3 +28,8 @@
141 sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
142 eautoreconf
143 }
144 +
145 +src_configure() {
146 + econf \
147 + $(use_enable openmp)
148 +}
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