[gentoo-commits] gentoo-x86 commit in sci-biology/gmap: metadata.xml ChangeLog gmap-2011.09.14.ebuild

[Andrey Kislyuk (weaver)]

weaver      11/09/25 21:57:32

  Modified:             metadata.xml ChangeLog
  Added:                gmap-2011.09.14.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.0_alpha45/cvs/Linux x86_64)

Revision  Changes    Path
1.3                  sci-biology/gmap/metadata.xml

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gmap/metadata.xml?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gmap/metadata.xml?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gmap/metadata.xml?r1=1.2&r2=1.3

Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/gmap/metadata.xml,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- metadata.xml	21 May 2011 19:02:38 -0000	1.2
+++ metadata.xml	25 Sep 2011 21:57:32 -0000	1.3
@@ -8,5 +8,6 @@
 	<herd>sci-biology</herd>
 	<use>
 	  <flag name='samtools'>Enable support for samtools</flag>
+	  <flag name='goby'>Enable support for goby</flag>
 	</use>
 </pkgmetadata>



1.10                 sci-biology/gmap/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gmap/ChangeLog?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gmap/ChangeLog?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gmap/ChangeLog?r1=1.9&r2=1.10

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- ChangeLog	21 May 2011 19:02:38 -0000	1.9
+++ ChangeLog	25 Sep 2011 21:57:32 -0000	1.10
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/gmap
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.9 2011/05/21 19:02:38 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.10 2011/09/25 21:57:32 weaver Exp $
+
+*gmap-2011.09.14 (25 Sep 2011)
+
+  25 Sep 2011; Andrey Kislyuk <weaver@g.o> +gmap-2011.09.14.ebuild:
+  Version bump
 
   21 May 2011; Andrey Kislyuk <weaver@g.o> +gmap-2011.03.28.ebuild:
   Version bump



1.1                  sci-biology/gmap/gmap-2011.09.14.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gmap/gmap-2011.09.14.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/gmap/gmap-2011.09.14.ebuild?rev=1.1&content-type=text/plain

Index: gmap-2011.09.14.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/gmap-2011.09.14.ebuild,v 1.1 2011/09/25 21:57:32 weaver Exp $

EAPI="2"

MY_PV=${PV//./-}

DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
HOMEPAGE="http://www.gene.com/share/gmap/"
SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"

LICENSE="gmap"
SLOT="0"
IUSE="+samtools +goby"
KEYWORDS="~amd64 ~x86"

DEPEND="samtools? ( sci-biology/samtools )
	goby? ( sci-biology/goby-cpp )"
RDEPEND="${DEPEND}"

S="${WORKDIR}/gmap-${MY_PV}"

src_configure() {
	econf $(use_with samtools) \
		$(use_with goby goby /usr)
}

src_install() {
	einstall || die
	dodoc AUTHORS ChangeLog README
}

src_test() {
	emake check || die
}