[gentoo-commits] repo/gentoo:master commit in: sci-biology/qrna/

[Andreas Sturmlechner]

commit:     55b9d1daf0b09521f151d2a25e46e4e7e309f9b3
Author:     Martin Mokrejš <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Fri Feb  9 15:51:13 2018 +0000
Commit:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Thu Apr  5 23:24:56 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=55b9d1da

sci-biology/qrna: DEPEND on sci-biology/hmmer:2

Closes: https://github.com/gentoo/gentoo/pull/7134

 sci-biology/qrna/qrna-2.0.3c-r3.ebuild | 58 ++++++++++++++++++++++++++++++++++
 1 file changed, 58 insertions(+)

diff --git a/sci-biology/qrna/qrna-2.0.3c-r3.ebuild b/sci-biology/qrna/qrna-2.0.3c-r3.ebuild
new file mode 100644
index 00000000000..5c580a24d2a
--- /dev/null
+++ b/sci-biology/qrna/qrna-2.0.3c-r3.ebuild
@@ -0,0 +1,58 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="Prototype ncRNA genefinder"
+HOMEPAGE="http://selab.janelia.org/software.html"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	dev-lang/perl
+	sci-biology/hmmer:2"
+DEPEND="${RDEPEND}"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-glibc-2.10.patch
+	"${FILESDIR}"/${P}-ldflags.patch
+)
+
+src_prepare() {
+	default
+	sed \
+		-e "s:^CC.*:CC = $(tc-getCC):" \
+		-e "/^AR/s:ar:$(tc-getAR):g" \
+		-e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
+		-e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
+		-i {src,squid,squid02}/Makefile || die
+	rm -v squid*/*.a || die
+}
+
+src_compile() {
+	local d
+	for d in squid squid02 src; do
+		emake -C ${d}
+	done
+}
+
+src_install() {
+	dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
+
+	newdoc 00README README
+	dodoc -r documentation/.
+
+	insinto /usr/share/${PN}/data
+	doins -r lib/.
+	insinto /usr/share/${PN}/demos
+	doins -r Demos/.
+
+	# Sets the path to the QRNA data files
+	doenvd "${FILESDIR}"/26qrna
+}