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commit: 0a8ba900d4d39a8f4d762fd9c04e470e3272b1d4 |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Tue Oct 27 21:40:10 2020 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Tue Oct 27 21:40:10 2020 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0a8ba900 |
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|
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sci-biology/profphd: Port to EAPI 7 |
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|
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Package-Manager: Portage-3.0.8, Repoman-3.0.2 |
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Signed-off-by: David Seifert <soap <AT> gentoo.org> |
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|
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.../profphd/files/profphd-1.0.40-symlink.patch | 11 ++++++++ |
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sci-biology/profphd/profphd-1.0.40.ebuild | 30 ++++++++++------------ |
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2 files changed, 24 insertions(+), 17 deletions(-) |
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|
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diff --git a/sci-biology/profphd/files/profphd-1.0.40-symlink.patch b/sci-biology/profphd/files/profphd-1.0.40-symlink.patch |
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new file mode 100644 |
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index 00000000000..7733d55af4a |
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--- /dev/null |
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+++ b/sci-biology/profphd/files/profphd-1.0.40-symlink.patch |
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@@ -0,0 +1,11 @@ |
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+--- a/src/prof/Makefile |
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++++ b/src/prof/Makefile |
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+@@ -40,7 +40,7 @@ |
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+ ./. $(DESTDIR)$(prefix)/share/profphd/prof/. |
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+ find $(DESTDIR)$(prefix)/share/profphd/prof/embl/phd.pl $(DESTDIR)$(prefix)/share/profphd/prof/scr/CONFprof.pl $(DESTDIR)$(prefix)/share/profphd/prof/prof $(DESTDIR)$(prefix)/share/profphd/prof/scr/lib/prof.pm \ |
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+ -type f -exec sed -i -e 's|__PREFIX__|$(prefix)|g;s|__VERSION__|$(VERSION)|;' {} \; |
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+- rm -rf $(DESTDIR)$(prefix)/bin/prof && mkdir -p $(DESTDIR)$(prefix)/bin && ln -s ../share/profphd/prof/prof $(DESTDIR)$(prefix)/bin/prof |
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++ rm -rf $(DESTDIR)$(prefix)/bin/prof && mkdir -p $(DESTDIR)$(prefix)/bin && ln -s ../share/profphd/prof/prof $(DESTDIR)$(prefix)/bin/profphd |
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+ |
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+ install-neuralnet: |
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+ mkdir -p $(DESTDIR)$(prefix)/share/profphd/prof/embl/para && rsync -aC \ |
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|
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diff --git a/sci-biology/profphd/profphd-1.0.40.ebuild b/sci-biology/profphd/profphd-1.0.40.ebuild |
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index 8e24cebeb5f..4f9a16a9fe9 100644 |
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--- a/sci-biology/profphd/profphd-1.0.40.ebuild |
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+++ b/sci-biology/profphd/profphd-1.0.40.ebuild |
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@@ -1,37 +1,33 @@ |
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-# Copyright 1999-2014 Gentoo Foundation |
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+# Copyright 1999-2020 Gentoo Authors |
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# Distributed under the terms of the GNU General Public License v2 |
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|
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-EAPI=5 |
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- |
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-inherit eutils |
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+EAPI=7 |
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|
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DESCRIPTION="Secondary structure and solvent accessibility predictor" |
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HOMEPAGE="https://rostlab.org/owiki/index.php/PROFphd_-_Secondary_Structure,_Solvent_Accessibility_and_Transmembrane_Helices_Prediction" |
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SRC_URI="ftp://rostlab.org/profphd/${P}.tar.xz" |
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|
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-SLOT="0" |
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LICENSE="GPL-2" |
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+SLOT="0" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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-IUSE="" |
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|
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DEPEND="dev-lang/perl" |
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-RDEPEND="${DEPEND} |
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+RDEPEND=" |
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+ ${DEPEND} |
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dev-perl/librg-utils-perl |
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sci-libs/profnet |
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- sci-libs/profphd-utils |
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-" |
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+ sci-libs/profphd-utils" |
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|
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-src_prepare() { |
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- sed \ |
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- -e '/ln -s/s:prof$:profphd:g' \ |
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- -i src/prof/Makefile || die |
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- epatch "${FILESDIR}"/${PN}-1.0.39-perl.patch |
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-} |
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+PATCHES=( |
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+ "${FILESDIR}"/${PN}-1.0.39-perl.patch |
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+ "${FILESDIR}"/${PN}-1.0.40-symlink.patch |
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+) |
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|
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src_compile() { |
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- emake prefix="${EPREFIX}/usr" |
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+ emake prefix="${EPREFIX}"/usr |
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} |
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|
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src_install() { |
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- emake prefix="${EPREFIX}/usr" DESTDIR="${D}" install |
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+ emake prefix="${EPREFIX}"/usr DESTDIR="${D}" install |
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+ einstalldocs |
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} |
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