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jlec 10/10/03 10:49:16 |
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|
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Modified: ChangeLog |
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Added: tinker-5.1.09.ebuild |
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Removed: tinker-5.1.08.ebuild |
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Log: |
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Version bump, fixes 335197 & 337074 |
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|
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(Portage version: 2.2_rc88/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.25 sci-chemistry/tinker/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tinker/ChangeLog?rev=1.25&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tinker/ChangeLog?rev=1.25&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tinker/ChangeLog?r1=1.24&r2=1.25 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v |
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retrieving revision 1.24 |
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retrieving revision 1.25 |
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diff -u -r1.24 -r1.25 |
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--- ChangeLog 3 Oct 2010 08:31:34 -0000 1.24 |
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+++ ChangeLog 3 Oct 2010 10:49:15 -0000 1.25 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-chemistry/tinker |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.24 2010/10/03 08:31:34 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.25 2010/10/03 10:49:15 jlec Exp $ |
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+ |
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+*tinker-5.1.09 (03 Oct 2010) |
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+ |
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+ 03 Oct 2010; Justin Lecher <jlec@g.o> +files/5.1.09-Makefile.patch, |
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+ -tinker-5.1.08.ebuild, +tinker-5.1.09.ebuild: |
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+ Version bump, fixes 335197 & 337074 |
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|
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03 Oct 2010; Justin Lecher <jlec@g.o> tinker-5.1.08.ebuild, |
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tinker-6.0.ebuild: |
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|
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|
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|
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1.1 sci-chemistry/tinker/tinker-5.1.09.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tinker/tinker-5.1.09.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tinker/tinker-5.1.09.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: tinker-5.1.09.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/tinker-5.1.09.ebuild,v 1.1 2010/10/03 10:49:16 jlec Exp $ |
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|
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EAPI="2" |
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FORTRAN="gfortran ifc" |
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|
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inherit eutils fortran java-pkg-opt-2 toolchain-funcs |
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|
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DESCRIPTION="Molecular modeling package that includes force fields, such as AMBER and CHARMM" |
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HOMEPAGE="http://dasher.wustl.edu/tinker/" |
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SRC_URI="http://dasher.wustl.edu/${PN}/downloads/${P}.tar.gz" |
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|
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SLOT="0" |
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LICENSE="Tinker" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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IUSE="examples" |
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|
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DEPEND=">=virtual/jdk-1.6" |
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RDEPEND=" |
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dev-libs/maloc |
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!dev-util/diffuse |
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>=sci-chemistry/apbs-1.2.1b-r4[tinker] |
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>=virtual/jre-1.6" |
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RESTRICT="mirror" |
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|
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S="${WORKDIR}"/tinker/source |
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|
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pkg_setup() { |
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fortran_pkg_setup |
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java-pkg-opt-2_pkg_setup |
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} |
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|
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src_prepare() { |
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cd .. |
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epatch "${FILESDIR}"/${PV}-Makefile.patch |
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} |
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|
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src_compile() { |
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local javalib= |
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for i in $(java-config -g LDPATH | sed 's|:| |g'); do |
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[[ -f ${i}/libjvm.so ]] && javalib=${i} |
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done |
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emake -e \ |
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-f ../make/Makefile \ |
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F77="${FORTRANC}" \ |
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CC="$(tc-getCC) -c" \ |
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F77FLAGS=-c \ |
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OPTFLAGS="${FFLAGS}" \ |
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LINKFLAGS="${LDFLAGS} -Wl,-rpath ${javalib}" \ |
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INCLUDEDIR="$(java-pkg_get-jni-cflags) -I${EPREFIX}/usr/include" \ |
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LIBS="$(pkg-config --libs apbs) -lmaloc -L${javalib} -ljvm" \ |
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all || die |
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mkdir "${S}"/../bin || die |
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|
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emake \ |
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-f ../make/Makefile \ |
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BINDIR="${S}"/../bin \ |
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rename || die |
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} |
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|
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src_test() { |
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cd "${WORKDIR}"/tinker/test/ |
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for test in *.run; do |
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einfo "Testing ${test} ..." |
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bash ${test} || die |
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done |
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} |
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|
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src_install() { |
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dobin "${WORKDIR}"/${PN}/perl/mdavg "${WORKDIR}"/${PN}/bin/* || die |
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|
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insinto /usr/share/${PN}/ |
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doins -r "${WORKDIR}"/${PN}/params || die |
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|
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dodoc \ |
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"${WORKDIR}"/${PN}/doc/{*.txt,announce/release-*,*.pdf,0README} || die |
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|
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if use examples; then |
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insinto /usr/share/${P} |
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doins -r "${WORKDIR}"/${PN}/example || die |
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|
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doins -r "${WORKDIR}"/${PN}/test || die |
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fi |
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|
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} |
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