[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/, sci-chemistry/gromacs/files/

[Alexey Shvetsov]

commit:     e62617ffb1b60e2a916b7a92659df2606374d62a
Author:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 21 16:19:40 2022 +0000
Commit:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Mon Feb 21 16:20:00 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e62617ff

sci-chemistry/gromacs: Fix musl build (missing int64_t) for 2022

Closes: https://bugs.gentoo.org/833599
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>

 .../gromacs/files/gromacs-2022-musl-stdint.patch   | 25 ++++++++++++++++++++++
 ...22_rc1-r1.ebuild => gromacs-2022_rc1-r2.ebuild} |  2 ++
 2 files changed, 27 insertions(+)

diff --git a/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch b/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch
new file mode 100644
index 000000000000..cae6fff93ae3
--- /dev/null
+++ b/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch
@@ -0,0 +1,25 @@
+From 694994a9d8ad989e7c5d61b7759024a7b10ce3b7 Mon Sep 17 00:00:00 2001
+From: Paul Bauer <paul.bauer.q@×××××.com>
+Date: Mon, 21 Feb 2022 09:53:46 +0100
+Subject: [PATCH 1/6] Fix missing includes for musl libc
+
+Fixes #4404
+---
+ api/legacy/include/gromacs/math/vectypes.h | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/api/legacy/include/gromacs/math/vectypes.h b/api/legacy/include/gromacs/math/vectypes.h
+index b818f5f8f8..7c5457e05d 100644
+--- a/api/legacy/include/gromacs/math/vectypes.h
++++ b/api/legacy/include/gromacs/math/vectypes.h
+@@ -36,6 +36,7 @@
+ 
+ #include <cassert>
+ #include <cmath>
++#include <cstdint>
+ 
+ #include <algorithm>
+ #include <type_traits>
+-- 
+2.35.1
+

diff --git a/sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild b/sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild
similarity index 99%
rename from sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild
rename to sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild
index f12ac52a719f..b0d42eda5cb0 100644
--- a/sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild
@@ -82,6 +82,8 @@ DOCS=( AUTHORS README )
 
 RESTRICT="!test? ( test )"
 
+PATCHES=( "${FILESDIR}/${PN}-2022-musl-stdint.patch" )
+
 if [[ ${PV} != *9999 ]]; then
 	S="${WORKDIR}/${PN}-${PV/_/-}"
 fi