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commit: c8acacd097c01e3fcdf254a41d17a6a25e1d648b |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue Aug 2 15:21:43 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue Aug 2 15:21:43 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c8acacd0 |
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|
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sci-biology/maker: roughly install correctly the main part |
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|
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Package-Manager: portage-2.3.0 |
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|
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sci-biology/maker/maker-2.31.8.ebuild | 16 +++++++++++++--- |
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1 file changed, 13 insertions(+), 3 deletions(-) |
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|
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diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild |
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index 21734c2..17661aa 100644 |
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--- a/sci-biology/maker/maker-2.31.8.ebuild |
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+++ b/sci-biology/maker/maker-2.31.8.ebuild |
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@@ -4,6 +4,7 @@ |
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|
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EAPI=5 |
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|
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+PERL_EXPORT_PHASE_FUNCTIONS=no |
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inherit eutils perl-module |
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|
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DESCRIPTION="A genome annotation viewer and pipeline for small eukaryota and prokaryota" |
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@@ -36,7 +37,6 @@ DEPEND=" |
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dev-perl/IO-Prompt |
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dev-perl/Perl-Unsafe-Signals |
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dev-perl/forks |
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- dev-perl/forks-shared |
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>=sci-biology/GAL-0.2.1 |
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>=sci-biology/bioperl-1.6 |
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sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ ) |
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@@ -45,6 +45,7 @@ DEPEND=" |
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sci-biology/augustus |
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sci-biology/repeatmasker" |
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RDEPEND="${DEPEND}" |
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+# dev-perl/forks-shared ? |
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|
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# ============================================================================== |
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# STATUS MAKER v2.31.8 |
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@@ -114,9 +115,18 @@ src_install(){ |
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find . -name mpi_evaluator | xargs rm || die |
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mv bin/compare bin/compare_gff3_to_chado # rename as agreed by upstream, will be in maker-3 as well |
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dobin bin/* |
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+ perl_set_version |
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+ insinto "${VENDOR_LIB}"/MAKER # uppercase, not "${PN}" |
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+ doins perl/lib/MAKER/*.pm |
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+ doman perl/man/*.3pm |
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+ insinto "${VENDOR_LIB}"/Parallel/Application |
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+ doins perl/lib/Parallel/Application/*.pm |
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+ insinto /usr/share/"${PN}"/data |
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+ doins data/* |
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+ # FIXME: find equivalent perl packages for lib/* contents, for example lib/GI.pm |
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dodoc README INSTALL |
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- insinto /usr/share/"{PN}"/GMOD/Apollo |
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+ insinto /usr/share/"${PN}"/GMOD/Apollo |
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doins GMOD/Apollo/gff3.tiers |
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- insinto /usr/share/"{PN}"/GMOD/JBrowse |
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+ insinto /usr/share/"${PN}"/GMOD/JBrowse |
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doins GMOD/JBrowse/maker.css |
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} |
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