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commit: cd2d3189dadad62ef240af7f543861f2f621bf4d |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Thu Nov 16 11:39:24 2017 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Thu Nov 16 13:16:37 2017 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cd2d3189 |
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|
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sci-biology/HTSeq: Initial addition |
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|
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Closes: https://github.com/gentoo/sci/pull/814 |
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Package-Manager: Portage-2.3.14, Repoman-2.3.6 |
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|
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sci-biology/HTSeq/HTSeq-0.9.1.ebuild | 31 +++++++++++++++++++++++++++++++ |
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sci-biology/HTSeq/HTSeq-9999.ebuild | 31 +++++++++++++++++++++++++++++++ |
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sci-biology/HTSeq/Manifest | 1 + |
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sci-biology/HTSeq/metadata.xml | 19 +++++++++++++++++++ |
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4 files changed, 82 insertions(+) |
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|
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diff --git a/sci-biology/HTSeq/HTSeq-0.9.1.ebuild b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild |
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new file mode 100644 |
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index 00000000000..446bbef36ef |
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--- /dev/null |
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+++ b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild |
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@@ -0,0 +1,31 @@ |
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+# Copyright 1999-2017 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) |
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+ |
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+inherit distutils-r1 |
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+ |
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+DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" |
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+HOMEPAGE="https://htseq.readthedocs.io/" |
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+ |
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+if [[ ${PV} == *9999 ]]; then |
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+ inherit git-r3 |
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+ EGIT_REPO_URI="https://github.com/simon-anders/htseq.git" |
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+else |
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+ SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" |
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+ KEYWORDS="~amd64" |
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+fi |
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+ |
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+LICENSE="GPL-3+" |
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+SLOT="0" |
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+ |
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+RDEPEND=" |
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+ dev-python/numpy[${PYTHON_USEDEP}] |
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+ dev-python/matplotlib[${PYTHON_USEDEP}] |
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+ sci-biology/pysam[${PYTHON_USEDEP}]" |
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+DEPEND=" |
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+ ${RDEPEND} |
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+ >=dev-lang/swig-3.0.8 |
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+ dev-python/cython[${PYTHON_USEDEP}]" |
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|
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diff --git a/sci-biology/HTSeq/HTSeq-9999.ebuild b/sci-biology/HTSeq/HTSeq-9999.ebuild |
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new file mode 100644 |
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index 00000000000..446bbef36ef |
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--- /dev/null |
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+++ b/sci-biology/HTSeq/HTSeq-9999.ebuild |
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@@ -0,0 +1,31 @@ |
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+# Copyright 1999-2017 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) |
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+ |
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+inherit distutils-r1 |
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+ |
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+DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" |
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+HOMEPAGE="https://htseq.readthedocs.io/" |
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+ |
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+if [[ ${PV} == *9999 ]]; then |
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+ inherit git-r3 |
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+ EGIT_REPO_URI="https://github.com/simon-anders/htseq.git" |
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+else |
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+ SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" |
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+ KEYWORDS="~amd64" |
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+fi |
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+ |
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+LICENSE="GPL-3+" |
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+SLOT="0" |
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+ |
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+RDEPEND=" |
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+ dev-python/numpy[${PYTHON_USEDEP}] |
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+ dev-python/matplotlib[${PYTHON_USEDEP}] |
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+ sci-biology/pysam[${PYTHON_USEDEP}]" |
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+DEPEND=" |
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+ ${RDEPEND} |
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+ >=dev-lang/swig-3.0.8 |
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+ dev-python/cython[${PYTHON_USEDEP}]" |
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|
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diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest |
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new file mode 100644 |
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index 00000000000..6d90d56d352 |
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--- /dev/null |
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+++ b/sci-biology/HTSeq/Manifest |
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@@ -0,0 +1 @@ |
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+DIST HTSeq-0.9.1.tar.gz 596941 SHA256 af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344 WHIRLPOOL da3f1d867f9cfa05e34321f75fb34ef79e943476ee650d4689e320078821703721168bfdd9e46f10f1319cc1006771cd205a80569549d21719d38aea6b0be3a8 |
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|
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diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml |
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new file mode 100644 |
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index 00000000000..e9ba18c35b3 |
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--- /dev/null |
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+++ b/sci-biology/HTSeq/metadata.xml |
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@@ -0,0 +1,19 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <maintainer type="person"> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+ <maintainer type="project"> |
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+ <email>proxy-maint@g.o</email> |
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+ <name>Proxy Maintainers</name> |
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+ </maintainer> |
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+ <maintainer type="project"> |
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+ <email>sci-biology@g.o</email> |
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+ <name>Gentoo Biology Project</name> |
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+ </maintainer> |
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+ <upstream> |
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+ <remote-id type="pypi">HTSeq</remote-id> |
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+ </upstream> |
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+</pkgmetadata> |