| 1 |
commit: 3fcb31051b785dc5e617e418073f07eedfcc8a1b |
| 2 |
Author: Bernd Waibel <waebbl <AT> gmail <DOT> com> |
| 3 |
AuthorDate: Tue Nov 7 19:54:42 2017 +0000 |
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Commit: Patrice Clement <monsieurp <AT> gentoo <DOT> org> |
| 5 |
CommitDate: Sun Dec 3 15:57:44 2017 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3fcb3105 |
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|
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sci-mathematics/rstudio: version bump to 1.1.383 |
| 9 |
|
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Ebuild is based on https://bugs.gentoo.org/attachment.cgi?id=494772 |
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and the published rstudio-1.1.368.ebuild file. |
| 12 |
|
| 13 |
files/rstudio-0.98.1091-boost-1.57.patch: removed from patches, it's no |
| 14 |
longer possible to apply this patch, due to changes in |
| 15 |
src/cpp/desktop/DesktopApplicationLaunch.hpp (see |
| 16 |
https://github.com/rstudio/rstudio/commit/585f7244797814d969418d8fe795d1952d84f6df) |
| 17 |
which added an #include <QProcess> statement which lets the patch fail. |
| 18 |
|
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Thanks to Bernd Feige <Bernd.Feige <AT> gmx.net> for the initial ebuild |
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and a17r on github for his suggestions on my first try to create a |
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PR for this. |
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|
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Bug: https://bugs.gentoo.org/633936 |
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Bug: https://bugs.gentoo.org/622254 |
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|
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Reported-by: Neil <nshephard <AT> gmail.com> (#633936) |
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Reported-by: Jonas Stein <jstein <AT> gentoo.org> (#622254) |
| 28 |
|
| 29 |
Package Manager: portage-2.3.13 repoman-2.3.4 |
| 30 |
Closes: https://github.com/gentoo/gentoo/pull/6145 |
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|
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sci-mathematics/rstudio/Manifest | 1 + |
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sci-mathematics/rstudio/rstudio-1.1.383.ebuild | 247 +++++++++++++++++++++++++ |
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2 files changed, 248 insertions(+) |
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|
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diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest |
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index 76c18739074..b86371e8947 100644 |
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--- a/sci-mathematics/rstudio/Manifest |
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+++ b/sci-mathematics/rstudio/Manifest |
| 40 |
@@ -6,6 +6,7 @@ DIST packrat-0.98.1000.tar.gz 97677 SHA256 c2da99ea6b62fd460f36b76f6c9b91865c428 |
| 41 |
DIST rmarkdown-0.98.1000.tar.gz 1423820 SHA256 56e9f964f805627f6d6face9bf09e6435be4cc48321447ad4041fee86d6f88b4 SHA512 df3540c24c87930fe55bff2ffe67c86c219800cb00ed72ba9451ecd0d0cad411548a78c1a04b9a2e301e853616dcb77e09129c4e48ade6f16d3f14b7ea7e4852 WHIRLPOOL 51098cd48a12a61da312fc1cc96927626db4a19cc069c88f615dd20abe40f52a7b1ac1325b52b1922110ffa76a7f255d9ff2a75cd05d3de01d1b96f0c8286790 |
| 42 |
DIST rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz 197051 SHA256 e1e3e1f799eb8be679be9a2ed5aad7e9ce6cd603e3cb43fdc242490f0c311113 SHA512 208dc349f4aa7613ecf94939aba60d22d3a06972344b526c9b6c951015571f5922927bca08db571a7b8a268e42609a4f558f01278c9685f6da2ffc66a1f95ade WHIRLPOOL 4e3d64de00a98190c435d76f12a401d30950fdc7590b6bcc886ae50d4771825d39f93ea2bdcb4a9db026361c522f16f11297ff89dcb15c35f9471c1abf4f4e2c |
| 43 |
DIST rstudio-1.1.368.tar.gz 20197144 SHA256 586573707a488b5f528680b932ba5f8ea6d07667cc5ae6426104e2abf5ddab75 SHA512 39cdf583d7dcd22338916cc0ea4f90681580e41663b2d3e04b2e650759c6b030c85ee111cdfe1f717f931932a9b7ca423a21585d69a785f056f754f6d50399a1 WHIRLPOOL e18ff21823638d458179819e0b0b234b80be2f095f5b7bf5b9ac0190b078f0d7acb51e8896cbfcf1ce33cd203ed4e9fbe097aac6eee62515cace1d2f08c08219 |
| 44 |
+DIST rstudio-1.1.383.tar.gz 20196702 BLAKE2B 5164230a92618e4252269ad0016b200294d1e7fa502cc49aa694486cda098ee7ffc65e6c74a87d891d0532f5cc15d1552aa86d04047d07b4f275cbc4d2758647 SHA512 3f637f9bce2c1ad1a4ed3e74287da722190a4e12b0cace6ffcca271977d49dcecca9365f2064366aad94e87851593cab83fa9361e9a9222a9f67fe9451f31ed2 |
| 45 |
DIST selenium-java-2.37.0.zip 24625928 SHA256 0eebba65d8edb01c1f46e462907c58f5d6e1cb0ddf63660a9985c8432bdffbb7 SHA512 68624e82dbc751a25c50fad72702a98eb30d77fd4337d2a969f8e06bcc49e5f8c835cd27ec53772f3375014ddde1d5636936e966b75f3594a9f86aa18ba4e779 WHIRLPOOL eb6659aae26f3c78b6f998546b23d0636c9d00ed8a7f985db1463ac4bd483ccb3e643d84e2ca0f59e0636a8de79eb552ff1d68eb6f9c06907029f7552d8f7777 |
| 46 |
DIST selenium-server-standalone-2.37.0.jar 34730734 SHA256 97bc8c699037fb6e99ba7af570fb60dbb1b7ce30cde2448287a44ef65b13023e SHA512 b215446d42d2d1f69664349b6ae6dc53a532d3624c91254f0f4183d0ad764648792e5cc1126a55a1e60d9687d55200fed01d6d2f46cc3d853b1fa6ee38111018 WHIRLPOOL 20640591534f31f24825a9ed139589b182e8b60d86541bf0be104d3cc0280983f6566bd0459f2253ac3875b48a2798b205bac8f815a119fff6db625ce9bbc29e |
| 47 |
DIST shinyapps-0.98.1000.tar.gz 910095 SHA256 b95c512ae0a0fb4335878d9cfcf9073e2cb3ccfed73543abe27ea8878ed36d57 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c WHIRLPOOL ecc2bce78387cb42e9989163d8fca29220e66f085acde3323417058aebb624dafa8c0e1873c7d79e67324cbd5aad250ef9fcdbbc8f659d64482233b95d898a15 |
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|
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diff --git a/sci-mathematics/rstudio/rstudio-1.1.383.ebuild b/sci-mathematics/rstudio/rstudio-1.1.383.ebuild |
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new file mode 100644 |
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index 00000000000..7b4808efd4e |
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--- /dev/null |
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+++ b/sci-mathematics/rstudio/rstudio-1.1.383.ebuild |
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@@ -0,0 +1,247 @@ |
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+# Copyright 1999-2017 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+inherit eutils user cmake-utils gnome2-utils pam versionator xdg-utils java-pkg-2 pax-utils qmake-utils |
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+ |
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+# TODO |
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+# * package gin and gwt |
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+# * use dict from tree, linguas |
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+# * do src_test (use junit from tree?) |
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+ |
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+# update from scripts in dependencies/common |
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+# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt |
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+GWT_VER=2.7.0 |
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+GIN_VER=1.5 |
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+SELENIUM_VER=2.37.0 |
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+CHROMEDRIVER_VER=2.7 |
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+# grep 'PANDOC_VERSION=' dependencies/common/update-pandoc |
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+PANDOC_VER=1.13.1 |
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+# ls dependencies/common/*.tar.gz |
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+PACKRAT_VER=0.98.1000 |
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+RMARKDOWN_VER=0.98.1000 |
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+SHINYAPPS_VER=0.98.1000 |
| 79 |
+RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0 |
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+ |
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+DESCRIPTION="IDE for the R language" |
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+HOMEPAGE=" |
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+ http://www.rstudio.org |
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+ https://github.com/rstudio/rstudio/" |
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+SRC_URI=" |
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+ https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz |
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+ https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip |
| 88 |
+ https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip |
| 89 |
+ https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip |
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+ https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar |
| 91 |
+ https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux |
| 92 |
+ https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip |
| 93 |
+ https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz |
| 94 |
+ https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz |
| 95 |
+ https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz |
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+ https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz |
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+" |
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+ |
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+LICENSE="AGPL-3" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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+IUSE="dedicated server" |
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+ |
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+QT_VER=5.4 |
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+QT_SLOT=5 |
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+RDEPEND=" |
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+ app-text/pandoc |
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+ dev-haskell/pandoc-citeproc |
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+ >=dev-lang/R-2.11.1 |
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+ >=dev-libs/boost-1.63:= |
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+ >=dev-libs/mathjax-2.7.0 |
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+ dev-libs/openssl:0 |
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+ sys-apps/util-linux |
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+ >=sys-devel/clang-3.5.0:* |
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+ sys-libs/zlib |
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+ >=virtual/jre-1.8:= |
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+ x11-libs/pango |
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+ !dedicated? ( |
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+ >=dev-qt/qtcore-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtgui-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5] |
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+ >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtsql-${QT_VER}:${QT_SLOT} |
| 130 |
+ >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT} |
| 132 |
+ >=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT} |
| 134 |
+ >=dev-qt/qtxml-${QT_VER}:${QT_SLOT} |
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+ >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT} |
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+ server? ( virtual/pam ) |
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+ ) |
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+ dedicated? ( virtual/pam )" |
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+DEPEND="${RDEPEND} |
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+ app-arch/unzip |
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+ dev-java/ant-core |
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+ >=virtual/jdk-1.8:= |
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+ virtual/pkgconfig" |
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+# test? ( dev-java/junit:4 ) |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}/${PN}-0.99.879-prefs.patch" |
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+ "${FILESDIR}/${PN}-1.0.44-paths.patch" |
| 149 |
+ "${FILESDIR}/${PN}-1.1.357-clang-pandoc.patch" |
| 150 |
+ "${FILESDIR}/${PN}-0.98.490-linker_flags.patch" |
| 151 |
+ "${FILESDIR}/${PN}-0.99.473-qtsingleapplication.patch" |
| 152 |
+ "${FILESDIR}/${PN}-1.0.44-systemd.patch" |
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+) |
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+ |
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+src_unpack() { |
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+ unpack ${P}.tar.gz gwt-${GWT_VER}.zip |
| 157 |
+ cd "${S}" || die |
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+ mkdir -p src/gwt/lib/{gin,gwt} \ |
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+ dependencies/common/dictionaries \ |
| 160 |
+ src/gwt/lib/selenium/${SELENIUM_VER} \ |
| 161 |
+ src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die |
| 162 |
+ mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die |
| 163 |
+ unzip -qd src/gwt/lib/gin/${GIN_VER} \ |
| 164 |
+ "${DISTDIR}"/gin-${GIN_VER}.zip || die |
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+ unzip -qd dependencies/common/dictionaries \ |
| 166 |
+ "${DISTDIR}"/core-dictionaries.zip || die |
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+ unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \ |
| 168 |
+ "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die |
| 169 |
+ cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \ |
| 170 |
+ src/gwt/lib/selenium/${SELENIUM_VER}/ || die |
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+ cp "${DISTDIR}"/chromedriver-linux \ |
| 172 |
+ src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die |
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+ cd dependencies/common || die |
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+ unpack packrat-${PACKRAT_VER}.tar.gz |
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+ unpack rmarkdown-${RMARKDOWN_VER}.tar.gz |
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+ unpack shinyapps-${SHINYAPPS_VER}.tar.gz |
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+ unpack rsconnect_${RSCONNECT_VER}.tar.gz |
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+ cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \ |
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+ . || die |
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+ cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \ |
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+ . || die |
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+ cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \ |
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+ . || die |
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+ cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \ |
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+ . || die |
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+} |
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+ |
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+src_prepare() { |
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+ default |
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+ java-pkg-2_src_prepare |
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+ egit_clean |
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+ |
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+ # Enable CMake to install our .service file for systemd usage |
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+ mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die |
| 195 |
+ cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die |
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+ |
| 197 |
+ # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using |
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+ # this sed hack for now. ~RMH |
| 199 |
+ sed -i \ |
| 200 |
+ -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \ |
| 201 |
+ src/cpp/server/ServerOptions.cpp \ |
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+ src/cpp/session/SessionOptions.cpp || die |
| 203 |
+ |
| 204 |
+ # use mathjax from system |
| 205 |
+ ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die |
| 206 |
+ |
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+ # make sure icons and mime stuff are with prefix |
| 208 |
+ sed -i \ |
| 209 |
+ -e "s:/usr:${EPREFIX}/usr:g" \ |
| 210 |
+ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die |
| 211 |
+ |
| 212 |
+ # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf |
| 213 |
+ sed -e "s@/etc/rstudio/rserver.conf@${EROOT}etc/conf.d/rstudio-server.conf@" \ |
| 214 |
+ -i src/cpp/server/ServerOptions.cpp \ |
| 215 |
+ || die |
| 216 |
+ |
| 217 |
+ # Set the rsession.conf file location for Gentoo prefix |
| 218 |
+ sed -e "s@/etc/rstudio/rsession.conf@${EROOT}etc/rstudio/rsession.conf@" \ |
| 219 |
+ -i src/cpp/session/SessionOptions.cpp \ |
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+ || die |
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+ |
| 222 |
+ # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module. |
| 223 |
+ # It provides a library that has its version number appended to the end, |
| 224 |
+ # which is difficult to handle in cmake, as find_library does not support |
| 225 |
+ # searching for wildcard library names. So I find the library name from the |
| 226 |
+ # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt. |
| 227 |
+ rm -rf "${S}"/src/cpp/desktop/3rdparty || die |
| 228 |
+ local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \ |
| 229 |
+ $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \ |
| 230 |
+ | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \ |
| 231 |
+ -e 's@LIBS \*= -l@@') |
| 232 |
+ sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \ |
| 233 |
+ -i "${S}"/src/cpp/desktop/CMakeLists.txt \ |
| 234 |
+ || die |
| 235 |
+ |
| 236 |
+ # The git commit for tag: git rev-list -n 1 v0.99.903 |
| 237 |
+ sed -e 's@git ARGS rev-parse HEAD@echo ARGS 0eb2d8ea28ebc1ac6ac327e023becb6133b679c4@'\ |
| 238 |
+ -i "${S}"/CMakeLists.txt \ |
| 239 |
+ "${S}"/CMakeGlobals.txt \ |
| 240 |
+ || die |
| 241 |
+} |
| 242 |
+ |
| 243 |
+src_configure() { |
| 244 |
+ export RSTUDIO_VERSION_MAJOR=$(get_version_component_range 1) |
| 245 |
+ export RSTUDIO_VERSION_MINOR=$(get_version_component_range 2) |
| 246 |
+ export RSTUDIO_VERSION_PATCH=$(get_version_component_range 3) |
| 247 |
+ |
| 248 |
+ local mycmakeargs=( |
| 249 |
+ -DDISTRO_SHARE=share/${PN} |
| 250 |
+ -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")" |
| 251 |
+ -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")") |
| 252 |
+ -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake |
| 253 |
+ -DRSTUDIO_VERIFY_R_VERSION=FALSE |
| 254 |
+ ) |
| 255 |
+ |
| 256 |
+ cmake-utils_src_configure |
| 257 |
+} |
| 258 |
+ |
| 259 |
+src_compile() { |
| 260 |
+ # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny |
| 261 |
+ # P: /root/.oracle_jre_usage. |
| 262 |
+ export ANT_OPTS="-Duser.home=${T}" |
| 263 |
+ cmake-utils_src_compile |
| 264 |
+} |
| 265 |
+ |
| 266 |
+src_install() { |
| 267 |
+ export ANT_OPTS="-Duser.home=${T}" |
| 268 |
+ cmake-utils_src_install |
| 269 |
+ pax-mark m "${ED}usr/bin/rstudio" |
| 270 |
+ doconfd "${FILESDIR}"/rstudio-server.conf |
| 271 |
+ dodir /etc/rstudio |
| 272 |
+ insinto /etc/rstudio |
| 273 |
+ doins "${FILESDIR}"/rsession.conf |
| 274 |
+ dosym "${ROOT}etc/conf.d/rstudio-server.conf" "${ROOT}etc/rstudio/rserver.conf" |
| 275 |
+ if use dedicated || use server; then |
| 276 |
+ dopamd src/cpp/server/extras/pam/rstudio |
| 277 |
+ newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server |
| 278 |
+ fi |
| 279 |
+} |
| 280 |
+ |
| 281 |
+pkg_preinst() { |
| 282 |
+ use dedicated || gnome2_icon_savelist |
| 283 |
+ java-pkg-2_pkg_preinst |
| 284 |
+} |
| 285 |
+ |
| 286 |
+pkg_postinst() { |
| 287 |
+ use dedicated || { xdg_desktop_database_update |
| 288 |
+ xdg_mimeinfo_database_update |
| 289 |
+ gnome2_icon_cache_update ;} |
| 290 |
+ |
| 291 |
+ if use dedicated || use server; then |
| 292 |
+ enewgroup rstudio-server |
| 293 |
+ enewuser rstudio-server -1 -1 -1 rstudio-server |
| 294 |
+ fi |
| 295 |
+} |
| 296 |
+ |
| 297 |
+pkg_postrm() { |
| 298 |
+ use dedicated || { xdg_desktop_database_update |
| 299 |
+ xdg_mimeinfo_database_update |
| 300 |
+ gnome2_icon_cache_update ;} |
| 301 |
+} |
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