[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

[Horea Christian]

commit:     3cbee5be144730e605f7f483a6a535b7bacbe9d2
Author:     Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Jul 31 12:20:33 2018 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jul 31 12:20:33 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=3cbee5be

sci-libs/nipy: Version bump and removed deprecated version

Package-Manager: Portage-2.3.44, Repoman-2.3.10

 sci-libs/nipy/nipy-0.3.0.ebuild | 35 ---------------------------
 sci-libs/nipy/nipy-0.4.2.ebuild | 53 +++++++++++++++++++++++++++++++++++++++++
 2 files changed, 53 insertions(+), 35 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild
deleted file mode 100644
index 7303490c9..000000000
--- a/sci-libs/nipy/nipy-0.3.0.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 eutils multilib flag-o-matic
-
-DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="http://nipy.org/"
-SRC_URI="mirror://pypi/${P:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
-	sci-libs/scipy[${PYTHON_USEDEP}]
-	dev-python/sympy[${PYTHON_USEDEP}]
-	>=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}
-	dev-python/setuptools[${PYTHON_USEDEP}]"
-
-python_prepare_all() {
-	distutils-r1_python_prepare_all
-	# bug #397605
-	[[ ${CHOST} == *-darwin* ]] \
-		&& append-ldflags -bundle "-undefined dynamic_lookup" \
-		|| append-ldflags -shared
-
-	# nipy uses the horrible numpy.distutils automagic
-}

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
new file mode 100644
index 000000000..6da963822
--- /dev/null
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1 eutils multilib flag-o-matic
+
+DESCRIPTION="Neuroimaging tools for Python"
+HOMEPAGE="http://nipy.org/"
+SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+	dev-python/prov[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	dev-python/sympy[${PYTHON_USEDEP}]
+	>=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	"
+
+DEPEND="
+	${RDEPEND}
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	"
+
+python_prepare_all() {
+	distutils-r1_python_prepare_all
+	# bug #397605
+	[[ ${CHOST} == *-darwin* ]] \
+		&& append-ldflags -bundle "-undefined dynamic_lookup" \
+		|| append-ldflags -shared
+
+	# nipy uses the horrible numpy.distutils automagic
+}
+
+python_test() {
+	distutils-r1_install_for_testing
+	cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/"
+	cp nipy/modalities/fmri/tests/*.{mat,npz,txt} "${BUILD_DIR}/lib/nipy/modalities/fmri/tests/"
+	cp nipy/algorithms/statistics/models/tests/test_data.bin "${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests"
+	cp nipy/labs/spatial_models/tests/some_blobs.nii "${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii"
+	mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+	cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+	cd "${BUILD_DIR}" || die
+	echo "backend : agg" > matplotlibrc
+	nosetests || die
+}