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xarthisius 10/09/07 11:51:10 |
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|
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Modified: ChangeLog |
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Added: bwa-0.5.0-r1.ebuild |
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Removed: bwa-0.4.6.ebuild |
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Log: |
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Respect LDFLAGS wrt bug 336348. Thanks to Diego for the report. Add proper pthread support, drop empty DEPENDs. Drop old. |
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(Portage version: 2.2_rc73/cvs/Linux x86_64) |
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Revision Changes Path |
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1.8 sci-biology/bwa/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.8&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.8&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.7&r2=1.8 |
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v |
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retrieving revision 1.7 |
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retrieving revision 1.8 |
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diff -u -r1.7 -r1.8 |
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--- ChangeLog 23 May 2010 21:15:12 -0000 1.7 |
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+++ ChangeLog 7 Sep 2010 11:51:10 -0000 1.8 |
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@@ -1,6 +1,13 @@ |
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# ChangeLog for sci-biology/bwa |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.7 2010/05/23 21:15:12 pacho Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.8 2010/09/07 11:51:10 xarthisius Exp $ |
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+ |
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+*bwa-0.5.0-r1 (07 Sep 2010) |
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+ |
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+ 07 Sep 2010; Kacper Kowalik <xarthisius@g.o> -bwa-0.4.6.ebuild, |
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+ +bwa-0.5.0-r1.ebuild: |
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+ Respect LDFLAGS wrt bug 336348. Thanks to Diego for the report. Add proper |
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+ pthread support, drop empty DEPENDs. Drop old. |
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|
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23 May 2010; Pacho Ramos <pacho@g.o> bwa-0.5.0.ebuild: |
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stable amd64, bug 314907 |
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1.1 sci-biology/bwa/bwa-0.5.0-r1.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.0-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.0-r1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: bwa-0.5.0-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.0-r1.ebuild,v 1.1 2010/09/07 11:51:10 xarthisius Exp $ |
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EAPI=2 |
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|
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inherit flag-o-matic toolchain-funcs |
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|
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DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner" |
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HOMEPAGE="http://maq.sourceforge.net/" |
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SRC_URI="mirror://sourceforge/maq/${P}.tar.bz2" |
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|
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LICENSE="GPL-3" |
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SLOT="0" |
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IUSE="" |
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KEYWORDS="~amd64 ~x86" |
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|
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src_prepare() { |
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sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \ |
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-i "${S}"/Makefile || die #336348 |
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append-flags -pthread |
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} |
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|
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src_compile() { |
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emake -e CC="$(tc-getCC)" || die |
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} |
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|
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src_install() { |
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dobin bwa || die |
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doman bwa.1 || die |
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exeinto /usr/share/${PN} |
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doexe solid2fastq.pl || die |
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dodoc ChangeLog NEWS || die |
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} |
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