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commit: d1b1268845627553e3b15302a1d35e4bee8333ea |
| 2 |
Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Sun Mar 6 20:54:08 2016 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Sun Mar 6 20:54:08 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d1b12688 |
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|
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Fix invalid metadata.xml syntax |
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|
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
| 12 |
dev-libs/intel-common/metadata.xml | 2 -- |
| 13 |
sci-biology/blasr/metadata.xml | 4 ---- |
| 14 |
sci-biology/brat/metadata.xml | 4 ---- |
| 15 |
sci-biology/codonw/metadata.xml | 4 ---- |
| 16 |
sci-biology/erpin/metadata.xml | 4 ---- |
| 17 |
sci-biology/estscan/metadata.xml | 2 -- |
| 18 |
sci-biology/fastdnaml/metadata.xml | 4 ---- |
| 19 |
sci-biology/gbrowse/metadata.xml | 9 +++------ |
| 20 |
sci-biology/genepop/metadata.xml | 4 ---- |
| 21 |
sci-biology/grappa/metadata.xml | 6 +----- |
| 22 |
sci-biology/igv/metadata.xml | 4 ---- |
| 23 |
sci-biology/mavid/metadata.xml | 4 ---- |
| 24 |
sci-biology/merlin/metadata.xml | 4 ---- |
| 25 |
sci-biology/miranda/metadata.xml | 4 ---- |
| 26 |
sci-biology/mosaik/metadata.xml | 4 ---- |
| 27 |
sci-biology/mreps/metadata.xml | 4 ---- |
| 28 |
sci-biology/mrfast/metadata.xml | 4 ---- |
| 29 |
sci-biology/mrsfast/metadata.xml | 4 ---- |
| 30 |
sci-biology/ncbi-blast+/metadata.xml | 16 ---------------- |
| 31 |
sci-biology/ncbi-tools++/metadata.xml | 20 -------------------- |
| 32 |
sci-biology/quicktree/metadata.xml | 4 ---- |
| 33 |
sci-biology/rnaplex/metadata.xml | 4 ---- |
| 34 |
sci-biology/signalp/metadata.xml | 4 ---- |
| 35 |
sci-biology/tmhmm/metadata.xml | 4 ---- |
| 36 |
sci-biology/twinscan/metadata.xml | 4 ---- |
| 37 |
sci-chemistry/nwchem/metadata.xml | 12 ------------ |
| 38 |
sci-chemistry/rosetta/metadata.xml | 2 +- |
| 39 |
sci-libs/bigdft-abi/metadata.xml | 8 -------- |
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sci-libs/ghmm/metadata.xml | 4 ---- |
| 41 |
sci-libs/gsl/metadata.xml | 2 -- |
| 42 |
sci-libs/mkl/metadata.xml | 2 -- |
| 43 |
sci-libs/trilinos/metadata.xml | 8 +++++--- |
| 44 |
sci-physics/abinit/metadata.xml | 30 ------------------------------ |
| 45 |
sci-physics/atompaw/metadata.xml | 4 +--- |
| 46 |
sci-physics/bigdft/metadata.xml | 8 -------- |
| 47 |
sci-physics/elk/metadata.xml | 4 ---- |
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sys-cluster/hpl/metadata.xml | 5 ----- |
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37 files changed, 11 insertions(+), 209 deletions(-) |
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|
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diff --git a/dev-libs/intel-common/metadata.xml b/dev-libs/intel-common/metadata.xml |
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index b4d319f..f880bd7 100644 |
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--- a/dev-libs/intel-common/metadata.xml |
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+++ b/dev-libs/intel-common/metadata.xml |
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@@ -11,8 +11,6 @@ |
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</longdescription> |
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<use> |
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<flag name="compiler">Install the libraries needed for the icc and ifort compilers</flag> |
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- </use> |
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- <use> |
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<flag name="mic">Install the libraries needed for supporting Intel Many Integrated Core (Xeon Phi)</flag> |
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</use> |
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</pkgmetadata> |
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|
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diff --git a/sci-biology/blasr/metadata.xml b/sci-biology/blasr/metadata.xml |
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index 4ef78c3..004c995 100644 |
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--- a/sci-biology/blasr/metadata.xml |
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+++ b/sci-biology/blasr/metadata.xml |
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@@ -1,10 +1,6 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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- <maintainer type="unknown"> |
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- <email>weaver@g.o</email> |
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- <name>Andrey Kislyuk</name> |
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- </maintainer> |
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<maintainer type="project"> |
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<email>sci-biology@g.o</email> |
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<name>Gentoo Biology Project</name> |
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|
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diff --git a/sci-biology/brat/metadata.xml b/sci-biology/brat/metadata.xml |
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index 4ef78c3..004c995 100644 |
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--- a/sci-biology/brat/metadata.xml |
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+++ b/sci-biology/brat/metadata.xml |
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@@ -1,10 +1,6 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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- <maintainer type="unknown"> |
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- <email>weaver@g.o</email> |
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- <name>Andrey Kislyuk</name> |
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- </maintainer> |
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<maintainer type="project"> |
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<email>sci-biology@g.o</email> |
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<name>Gentoo Biology Project</name> |
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|
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diff --git a/sci-biology/codonw/metadata.xml b/sci-biology/codonw/metadata.xml |
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index 6242070..f66d7b7 100644 |
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--- a/sci-biology/codonw/metadata.xml |
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+++ b/sci-biology/codonw/metadata.xml |
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@@ -1,10 +1,6 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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- <maintainer type="unknown"> |
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- <email>weaver@g.o</email> |
| 107 |
- <name>Andrey Kislyuk</name> |
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- </maintainer> |
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<maintainer type="project"> |
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<email>sci-biology@g.o</email> |
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<name>Gentoo Biology Project</name> |
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|
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diff --git a/sci-biology/erpin/metadata.xml b/sci-biology/erpin/metadata.xml |
| 114 |
index 4ef78c3..004c995 100644 |
| 115 |
--- a/sci-biology/erpin/metadata.xml |
| 116 |
+++ b/sci-biology/erpin/metadata.xml |
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@@ -1,10 +1,6 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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- <maintainer type="unknown"> |
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- <email>weaver@g.o</email> |
| 123 |
- <name>Andrey Kislyuk</name> |
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- </maintainer> |
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<maintainer type="project"> |
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<email>sci-biology@g.o</email> |
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<name>Gentoo Biology Project</name> |
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|
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diff --git a/sci-biology/estscan/metadata.xml b/sci-biology/estscan/metadata.xml |
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index 462149b..d709341 100644 |
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--- a/sci-biology/estscan/metadata.xml |
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+++ b/sci-biology/estscan/metadata.xml |
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@@ -11,8 +11,6 @@ |
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</maintainer> |
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<use> |
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<flag name="icc">Undocumented USE</flag> |
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- </use> |
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- <use> |
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<flag name="ifc">Undocumented USE</flag> |
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</use> |
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<upstream> |
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|
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diff --git a/sci-biology/fastdnaml/metadata.xml b/sci-biology/fastdnaml/metadata.xml |
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index 4ef78c3..004c995 100644 |
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--- a/sci-biology/fastdnaml/metadata.xml |
| 146 |
+++ b/sci-biology/fastdnaml/metadata.xml |
| 147 |
@@ -1,10 +1,6 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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- <maintainer type="unknown"> |
| 152 |
- <email>weaver@g.o</email> |
| 153 |
- <name>Andrey Kislyuk</name> |
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- </maintainer> |
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<maintainer type="project"> |
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<email>sci-biology@g.o</email> |
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<name>Gentoo Biology Project</name> |
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|
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diff --git a/sci-biology/gbrowse/metadata.xml b/sci-biology/gbrowse/metadata.xml |
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index 6e0ee19..d0116db 100644 |
| 161 |
--- a/sci-biology/gbrowse/metadata.xml |
| 162 |
+++ b/sci-biology/gbrowse/metadata.xml |
| 163 |
@@ -1,17 +1,14 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
| 167 |
- <maintainer type="unknown"> |
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- <email>weaver@g.o</email> |
| 169 |
- <name>Andrey Kislyuk</name> |
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- <description>GBrowse is a generic genome browser.</description> |
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- </maintainer> |
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<maintainer type="project"> |
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<email>sci-biology@g.o</email> |
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<name>Gentoo Biology Project</name> |
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</maintainer> |
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<longdescription lang="en"> |
| 177 |
- GBrowse is a generic genome browser written in perl, could run as CGI, under mod_perl. Something called Apache::Registry should make it faster. It uses mysql or postgres as the storage engine. |
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+ GBrowse is a generic genome browser written in perl, could run as CGI, |
| 179 |
+ under mod_perl. Something called Apache::Registry should make it faster. |
| 180 |
+ It uses mysql or postgres as the storage engine. |
| 181 |
</longdescription> |
| 182 |
<upstream> |
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<remote-id type="sourceforge">gmod</remote-id> |
| 184 |
|
| 185 |
diff --git a/sci-biology/genepop/metadata.xml b/sci-biology/genepop/metadata.xml |
| 186 |
index 4ef78c3..004c995 100644 |
| 187 |
--- a/sci-biology/genepop/metadata.xml |
| 188 |
+++ b/sci-biology/genepop/metadata.xml |
| 189 |
@@ -1,10 +1,6 @@ |
| 190 |
<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 192 |
<pkgmetadata> |
| 193 |
- <maintainer type="unknown"> |
| 194 |
- <email>weaver@g.o</email> |
| 195 |
- <name>Andrey Kislyuk</name> |
| 196 |
- </maintainer> |
| 197 |
<maintainer type="project"> |
| 198 |
<email>sci-biology@g.o</email> |
| 199 |
<name>Gentoo Biology Project</name> |
| 200 |
|
| 201 |
diff --git a/sci-biology/grappa/metadata.xml b/sci-biology/grappa/metadata.xml |
| 202 |
index 525e88d..8417d15 100644 |
| 203 |
--- a/sci-biology/grappa/metadata.xml |
| 204 |
+++ b/sci-biology/grappa/metadata.xml |
| 205 |
@@ -1,12 +1,8 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
| 209 |
- <maintainer type="unknown"> |
| 210 |
- <email>weaver@g.o</email> |
| 211 |
- <name>Andrey Kislyuk</name> |
| 212 |
- </maintainer> |
| 213 |
<maintainer type="project"> |
| 214 |
<email>sci-biology@g.o</email> |
| 215 |
<name>Gentoo Biology Project</name> |
| 216 |
</maintainer> |
| 217 |
- </pkgmetadata> |
| 218 |
+</pkgmetadata> |
| 219 |
|
| 220 |
diff --git a/sci-biology/igv/metadata.xml b/sci-biology/igv/metadata.xml |
| 221 |
index b95b6d9..661a0ad 100644 |
| 222 |
--- a/sci-biology/igv/metadata.xml |
| 223 |
+++ b/sci-biology/igv/metadata.xml |
| 224 |
@@ -1,10 +1,6 @@ |
| 225 |
<?xml version="1.0" encoding="UTF-8"?> |
| 226 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 227 |
<pkgmetadata> |
| 228 |
- <maintainer type="unknown"> |
| 229 |
- <email>weaver@g.o</email> |
| 230 |
- <name>Andrey Kislyuk</name> |
| 231 |
- </maintainer> |
| 232 |
<maintainer type="project"> |
| 233 |
<email>sci-biology@g.o</email> |
| 234 |
<name>Gentoo Biology Project</name> |
| 235 |
|
| 236 |
diff --git a/sci-biology/mavid/metadata.xml b/sci-biology/mavid/metadata.xml |
| 237 |
index 4ef78c3..004c995 100644 |
| 238 |
--- a/sci-biology/mavid/metadata.xml |
| 239 |
+++ b/sci-biology/mavid/metadata.xml |
| 240 |
@@ -1,10 +1,6 @@ |
| 241 |
<?xml version="1.0" encoding="UTF-8"?> |
| 242 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 243 |
<pkgmetadata> |
| 244 |
- <maintainer type="unknown"> |
| 245 |
- <email>weaver@g.o</email> |
| 246 |
- <name>Andrey Kislyuk</name> |
| 247 |
- </maintainer> |
| 248 |
<maintainer type="project"> |
| 249 |
<email>sci-biology@g.o</email> |
| 250 |
<name>Gentoo Biology Project</name> |
| 251 |
|
| 252 |
diff --git a/sci-biology/merlin/metadata.xml b/sci-biology/merlin/metadata.xml |
| 253 |
index 525e88d..affa6b4 100644 |
| 254 |
--- a/sci-biology/merlin/metadata.xml |
| 255 |
+++ b/sci-biology/merlin/metadata.xml |
| 256 |
@@ -1,10 +1,6 @@ |
| 257 |
<?xml version="1.0" encoding="UTF-8"?> |
| 258 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 259 |
<pkgmetadata> |
| 260 |
- <maintainer type="unknown"> |
| 261 |
- <email>weaver@g.o</email> |
| 262 |
- <name>Andrey Kislyuk</name> |
| 263 |
- </maintainer> |
| 264 |
<maintainer type="project"> |
| 265 |
<email>sci-biology@g.o</email> |
| 266 |
<name>Gentoo Biology Project</name> |
| 267 |
|
| 268 |
diff --git a/sci-biology/miranda/metadata.xml b/sci-biology/miranda/metadata.xml |
| 269 |
index 4ef78c3..004c995 100644 |
| 270 |
--- a/sci-biology/miranda/metadata.xml |
| 271 |
+++ b/sci-biology/miranda/metadata.xml |
| 272 |
@@ -1,10 +1,6 @@ |
| 273 |
<?xml version="1.0" encoding="UTF-8"?> |
| 274 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 275 |
<pkgmetadata> |
| 276 |
- <maintainer type="unknown"> |
| 277 |
- <email>weaver@g.o</email> |
| 278 |
- <name>Andrey Kislyuk</name> |
| 279 |
- </maintainer> |
| 280 |
<maintainer type="project"> |
| 281 |
<email>sci-biology@g.o</email> |
| 282 |
<name>Gentoo Biology Project</name> |
| 283 |
|
| 284 |
diff --git a/sci-biology/mosaik/metadata.xml b/sci-biology/mosaik/metadata.xml |
| 285 |
index 4ef78c3..004c995 100644 |
| 286 |
--- a/sci-biology/mosaik/metadata.xml |
| 287 |
+++ b/sci-biology/mosaik/metadata.xml |
| 288 |
@@ -1,10 +1,6 @@ |
| 289 |
<?xml version="1.0" encoding="UTF-8"?> |
| 290 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 291 |
<pkgmetadata> |
| 292 |
- <maintainer type="unknown"> |
| 293 |
- <email>weaver@g.o</email> |
| 294 |
- <name>Andrey Kislyuk</name> |
| 295 |
- </maintainer> |
| 296 |
<maintainer type="project"> |
| 297 |
<email>sci-biology@g.o</email> |
| 298 |
<name>Gentoo Biology Project</name> |
| 299 |
|
| 300 |
diff --git a/sci-biology/mreps/metadata.xml b/sci-biology/mreps/metadata.xml |
| 301 |
index 4ef78c3..004c995 100644 |
| 302 |
--- a/sci-biology/mreps/metadata.xml |
| 303 |
+++ b/sci-biology/mreps/metadata.xml |
| 304 |
@@ -1,10 +1,6 @@ |
| 305 |
<?xml version="1.0" encoding="UTF-8"?> |
| 306 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 307 |
<pkgmetadata> |
| 308 |
- <maintainer type="unknown"> |
| 309 |
- <email>weaver@g.o</email> |
| 310 |
- <name>Andrey Kislyuk</name> |
| 311 |
- </maintainer> |
| 312 |
<maintainer type="project"> |
| 313 |
<email>sci-biology@g.o</email> |
| 314 |
<name>Gentoo Biology Project</name> |
| 315 |
|
| 316 |
diff --git a/sci-biology/mrfast/metadata.xml b/sci-biology/mrfast/metadata.xml |
| 317 |
index eb9e92d..3d6ede5 100644 |
| 318 |
--- a/sci-biology/mrfast/metadata.xml |
| 319 |
+++ b/sci-biology/mrfast/metadata.xml |
| 320 |
@@ -1,10 +1,6 @@ |
| 321 |
<?xml version="1.0" encoding="UTF-8"?> |
| 322 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 323 |
<pkgmetadata> |
| 324 |
- <maintainer type="unknown"> |
| 325 |
- <email>weaver@g.o</email> |
| 326 |
- <name>Andrey Kislyuk</name> |
| 327 |
- </maintainer> |
| 328 |
<maintainer type="project"> |
| 329 |
<email>sci-biology@g.o</email> |
| 330 |
<name>Gentoo Biology Project</name> |
| 331 |
|
| 332 |
diff --git a/sci-biology/mrsfast/metadata.xml b/sci-biology/mrsfast/metadata.xml |
| 333 |
index aa16b13..e27afba 100644 |
| 334 |
--- a/sci-biology/mrsfast/metadata.xml |
| 335 |
+++ b/sci-biology/mrsfast/metadata.xml |
| 336 |
@@ -1,10 +1,6 @@ |
| 337 |
<?xml version="1.0" encoding="UTF-8"?> |
| 338 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 339 |
<pkgmetadata> |
| 340 |
- <maintainer type="unknown"> |
| 341 |
- <email>weaver@g.o</email> |
| 342 |
- <name>Andrey Kislyuk</name> |
| 343 |
- </maintainer> |
| 344 |
<maintainer type="project"> |
| 345 |
<email>sci-biology@g.o</email> |
| 346 |
<name>Gentoo Biology Project</name> |
| 347 |
|
| 348 |
diff --git a/sci-biology/ncbi-blast+/metadata.xml b/sci-biology/ncbi-blast+/metadata.xml |
| 349 |
index f9db152..8f9041e 100644 |
| 350 |
--- a/sci-biology/ncbi-blast+/metadata.xml |
| 351 |
+++ b/sci-biology/ncbi-blast+/metadata.xml |
| 352 |
@@ -11,29 +11,13 @@ |
| 353 |
</maintainer> |
| 354 |
<use> |
| 355 |
<flag name="boost">Undocumented USE</flag> |
| 356 |
- </use> |
| 357 |
- <use> |
| 358 |
<flag name="cppunit">Undocumented USE</flag> |
| 359 |
- </use> |
| 360 |
- <use> |
| 361 |
<flag name="freetype">Undocumented USE</flag> |
| 362 |
- </use> |
| 363 |
- <use> |
| 364 |
<flag name="mesa">Undocumented USE</flag> |
| 365 |
- </use> |
| 366 |
- <use> |
| 367 |
<flag name="muparser">Undocumented USE</flag> |
| 368 |
- </use> |
| 369 |
- <use> |
| 370 |
<flag name="sablotron">Undocumented USE</flag> |
| 371 |
- </use> |
| 372 |
- <use> |
| 373 |
<flag name="xerces">Undocumented USE</flag> |
| 374 |
- </use> |
| 375 |
- <use> |
| 376 |
<flag name="xalan">Undocumented USE</flag> |
| 377 |
- </use> |
| 378 |
- <use> |
| 379 |
<flag name="xslt">Undocumented USE</flag> |
| 380 |
</use> |
| 381 |
</pkgmetadata> |
| 382 |
|
| 383 |
diff --git a/sci-biology/ncbi-tools++/metadata.xml b/sci-biology/ncbi-tools++/metadata.xml |
| 384 |
index 157c35a..27b1bf1 100644 |
| 385 |
--- a/sci-biology/ncbi-tools++/metadata.xml |
| 386 |
+++ b/sci-biology/ncbi-tools++/metadata.xml |
| 387 |
@@ -1,39 +1,19 @@ |
| 388 |
<?xml version="1.0" encoding="UTF-8"?> |
| 389 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 390 |
<pkgmetadata> |
| 391 |
- <maintainer type="unknown"> |
| 392 |
- <email>weaver@g.o</email> |
| 393 |
- <name>Andrey Kislyuk</name> |
| 394 |
- </maintainer> |
| 395 |
<maintainer type="project"> |
| 396 |
<email>sci-biology@g.o</email> |
| 397 |
<name>Gentoo Biology Project</name> |
| 398 |
</maintainer> |
| 399 |
<use> |
| 400 |
<flag name="boost">Undocumented USE</flag> |
| 401 |
- </use> |
| 402 |
- <use> |
| 403 |
<flag name="cppunit">Undocumented USE</flag> |
| 404 |
- </use> |
| 405 |
- <use> |
| 406 |
<flag name="freetype">Undocumented USE</flag> |
| 407 |
- </use> |
| 408 |
- <use> |
| 409 |
<flag name="mesa">Undocumented USE</flag> |
| 410 |
- </use> |
| 411 |
- <use> |
| 412 |
<flag name="muparser">Undocumented USE</flag> |
| 413 |
- </use> |
| 414 |
- <use> |
| 415 |
<flag name="sablotron">Undocumented USE</flag> |
| 416 |
- </use> |
| 417 |
- <use> |
| 418 |
<flag name="xerces">Undocumented USE</flag> |
| 419 |
- </use> |
| 420 |
- <use> |
| 421 |
<flag name="xalan">Undocumented USE</flag> |
| 422 |
- </use> |
| 423 |
- <use> |
| 424 |
<flag name="xslt">Undocumented USE</flag> |
| 425 |
</use> |
| 426 |
</pkgmetadata> |
| 427 |
|
| 428 |
diff --git a/sci-biology/quicktree/metadata.xml b/sci-biology/quicktree/metadata.xml |
| 429 |
index 4ef78c3..004c995 100644 |
| 430 |
--- a/sci-biology/quicktree/metadata.xml |
| 431 |
+++ b/sci-biology/quicktree/metadata.xml |
| 432 |
@@ -1,10 +1,6 @@ |
| 433 |
<?xml version="1.0" encoding="UTF-8"?> |
| 434 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 435 |
<pkgmetadata> |
| 436 |
- <maintainer type="unknown"> |
| 437 |
- <email>weaver@g.o</email> |
| 438 |
- <name>Andrey Kislyuk</name> |
| 439 |
- </maintainer> |
| 440 |
<maintainer type="project"> |
| 441 |
<email>sci-biology@g.o</email> |
| 442 |
<name>Gentoo Biology Project</name> |
| 443 |
|
| 444 |
diff --git a/sci-biology/rnaplex/metadata.xml b/sci-biology/rnaplex/metadata.xml |
| 445 |
index 525e88d..affa6b4 100644 |
| 446 |
--- a/sci-biology/rnaplex/metadata.xml |
| 447 |
+++ b/sci-biology/rnaplex/metadata.xml |
| 448 |
@@ -1,10 +1,6 @@ |
| 449 |
<?xml version="1.0" encoding="UTF-8"?> |
| 450 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 451 |
<pkgmetadata> |
| 452 |
- <maintainer type="unknown"> |
| 453 |
- <email>weaver@g.o</email> |
| 454 |
- <name>Andrey Kislyuk</name> |
| 455 |
- </maintainer> |
| 456 |
<maintainer type="project"> |
| 457 |
<email>sci-biology@g.o</email> |
| 458 |
<name>Gentoo Biology Project</name> |
| 459 |
|
| 460 |
diff --git a/sci-biology/signalp/metadata.xml b/sci-biology/signalp/metadata.xml |
| 461 |
index 525e88d..affa6b4 100644 |
| 462 |
--- a/sci-biology/signalp/metadata.xml |
| 463 |
+++ b/sci-biology/signalp/metadata.xml |
| 464 |
@@ -1,10 +1,6 @@ |
| 465 |
<?xml version="1.0" encoding="UTF-8"?> |
| 466 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 467 |
<pkgmetadata> |
| 468 |
- <maintainer type="unknown"> |
| 469 |
- <email>weaver@g.o</email> |
| 470 |
- <name>Andrey Kislyuk</name> |
| 471 |
- </maintainer> |
| 472 |
<maintainer type="project"> |
| 473 |
<email>sci-biology@g.o</email> |
| 474 |
<name>Gentoo Biology Project</name> |
| 475 |
|
| 476 |
diff --git a/sci-biology/tmhmm/metadata.xml b/sci-biology/tmhmm/metadata.xml |
| 477 |
index 525e88d..affa6b4 100644 |
| 478 |
--- a/sci-biology/tmhmm/metadata.xml |
| 479 |
+++ b/sci-biology/tmhmm/metadata.xml |
| 480 |
@@ -1,10 +1,6 @@ |
| 481 |
<?xml version="1.0" encoding="UTF-8"?> |
| 482 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 483 |
<pkgmetadata> |
| 484 |
- <maintainer type="unknown"> |
| 485 |
- <email>weaver@g.o</email> |
| 486 |
- <name>Andrey Kislyuk</name> |
| 487 |
- </maintainer> |
| 488 |
<maintainer type="project"> |
| 489 |
<email>sci-biology@g.o</email> |
| 490 |
<name>Gentoo Biology Project</name> |
| 491 |
|
| 492 |
diff --git a/sci-biology/twinscan/metadata.xml b/sci-biology/twinscan/metadata.xml |
| 493 |
index 4ef78c3..004c995 100644 |
| 494 |
--- a/sci-biology/twinscan/metadata.xml |
| 495 |
+++ b/sci-biology/twinscan/metadata.xml |
| 496 |
@@ -1,10 +1,6 @@ |
| 497 |
<?xml version="1.0" encoding="UTF-8"?> |
| 498 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 499 |
<pkgmetadata> |
| 500 |
- <maintainer type="unknown"> |
| 501 |
- <email>weaver@g.o</email> |
| 502 |
- <name>Andrey Kislyuk</name> |
| 503 |
- </maintainer> |
| 504 |
<maintainer type="project"> |
| 505 |
<email>sci-biology@g.o</email> |
| 506 |
<name>Gentoo Biology Project</name> |
| 507 |
|
| 508 |
diff --git a/sci-chemistry/nwchem/metadata.xml b/sci-chemistry/nwchem/metadata.xml |
| 509 |
index 7532c37..9770676 100644 |
| 510 |
--- a/sci-chemistry/nwchem/metadata.xml |
| 511 |
+++ b/sci-chemistry/nwchem/metadata.xml |
| 512 |
@@ -13,32 +13,20 @@ |
| 513 |
<flag name="blas"> |
| 514 |
Use external BLAS library instead of the internal routines |
| 515 |
</flag> |
| 516 |
- </use> |
| 517 |
- <use> |
| 518 |
<flag name="cuda"> |
| 519 |
Enable CUDA GPU support for the Tensor Contraction Engine generated |
| 520 |
methods (CI, MBPT, CC) |
| 521 |
</flag> |
| 522 |
- </use> |
| 523 |
- <use> |
| 524 |
<flag name="int64"> |
| 525 |
Use 64 bits integers |
| 526 |
</flag> |
| 527 |
- </use> |
| 528 |
- <use> |
| 529 |
<flag name="lapack"> |
| 530 |
Use external LAPACK library instead of the internal routines |
| 531 |
</flag> |
| 532 |
- </use> |
| 533 |
- <use> |
| 534 |
<flag name="mrcc"> |
| 535 |
Compile the routines for Multi Reference Coupled Clusters theory |
| 536 |
</flag> |
| 537 |
- </use> |
| 538 |
- <use> |
| 539 |
<flag name="nwchem-tests">Install qa tests data</flag> |
| 540 |
- </use> |
| 541 |
- <use> |
| 542 |
<flag name="scalapack"> |
| 543 |
Use external SCALAPACK library |
| 544 |
</flag> |
| 545 |
|
| 546 |
diff --git a/sci-chemistry/rosetta/metadata.xml b/sci-chemistry/rosetta/metadata.xml |
| 547 |
index 768f3c0..bbd6530 100644 |
| 548 |
--- a/sci-chemistry/rosetta/metadata.xml |
| 549 |
+++ b/sci-chemistry/rosetta/metadata.xml |
| 550 |
@@ -12,6 +12,6 @@ |
| 551 |
<flag name="lange">Apply patches from www.csrosetta.org</flag> |
| 552 |
</use> |
| 553 |
<upstream> |
| 554 |
- <bugs-to>general-support@×××××××××××××××××××.org</bugs-to> |
| 555 |
+ <bugs-to>mailto:general-support@×××××××××××××××××××.org</bugs-to> |
| 556 |
</upstream> |
| 557 |
</pkgmetadata> |
| 558 |
|
| 559 |
diff --git a/sci-libs/bigdft-abi/metadata.xml b/sci-libs/bigdft-abi/metadata.xml |
| 560 |
index 1f6b96a..59ce9fb 100644 |
| 561 |
--- a/sci-libs/bigdft-abi/metadata.xml |
| 562 |
+++ b/sci-libs/bigdft-abi/metadata.xml |
| 563 |
@@ -14,22 +14,14 @@ to serve as a library for sci-physics/abinit. |
| 564 |
</longdescription> |
| 565 |
<use> |
| 566 |
<flag name="cuda">Enable support for nVidia CUDA</flag> |
| 567 |
- </use> |
| 568 |
- <use> |
| 569 |
<flag name="etsf_io"> |
| 570 |
Enable support for reading and writing the European Theoretical |
| 571 |
Spectroscopy facility (ETSF) file format |
| 572 |
</flag> |
| 573 |
- </use> |
| 574 |
- <use> |
| 575 |
<flag name="glib"> |
| 576 |
Compile with GLib Object System support |
| 577 |
</flag> |
| 578 |
- </use> |
| 579 |
- <use> |
| 580 |
<flag name="opencl">Enable support for OpenCL GPU acceleration</flag> |
| 581 |
- </use> |
| 582 |
- <use> |
| 583 |
<flag name="scalapack"> |
| 584 |
Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing |
| 585 |
</flag> |
| 586 |
|
| 587 |
diff --git a/sci-libs/ghmm/metadata.xml b/sci-libs/ghmm/metadata.xml |
| 588 |
index ab84552..e6d6c6c 100644 |
| 589 |
--- a/sci-libs/ghmm/metadata.xml |
| 590 |
+++ b/sci-libs/ghmm/metadata.xml |
| 591 |
@@ -1,10 +1,6 @@ |
| 592 |
<?xml version="1.0" encoding="UTF-8"?> |
| 593 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 594 |
<pkgmetadata> |
| 595 |
- <maintainer type="unknown"> |
| 596 |
- <email>weaver@g.o</email> |
| 597 |
- <name>Andrey Kislyuk</name> |
| 598 |
- </maintainer> |
| 599 |
<maintainer type="project"> |
| 600 |
<email>sci@g.o</email> |
| 601 |
<name>Gentoo Science Project</name> |
| 602 |
|
| 603 |
diff --git a/sci-libs/gsl/metadata.xml b/sci-libs/gsl/metadata.xml |
| 604 |
index 88a83b3..bac5f49 100644 |
| 605 |
--- a/sci-libs/gsl/metadata.xml |
| 606 |
+++ b/sci-libs/gsl/metadata.xml |
| 607 |
@@ -21,8 +21,6 @@ |
| 608 |
<use> |
| 609 |
<flag name="cblas-external">Link gsl with external cblas provided by |
| 610 |
(<pkg>virtual/cblas</pkg>) instead of shipped internal version</flag> |
| 611 |
- </use> |
| 612 |
- <use> |
| 613 |
<flag name="int64">Build the 64 bits integer library</flag> |
| 614 |
</use> |
| 615 |
</pkgmetadata> |
| 616 |
|
| 617 |
diff --git a/sci-libs/mkl/metadata.xml b/sci-libs/mkl/metadata.xml |
| 618 |
index 8e7ff6c..318c961 100644 |
| 619 |
--- a/sci-libs/mkl/metadata.xml |
| 620 |
+++ b/sci-libs/mkl/metadata.xml |
| 621 |
@@ -15,8 +15,6 @@ |
| 622 |
</longdescription> |
| 623 |
<use> |
| 624 |
<flag name="int64">Build the 64 bits integer library</flag> |
| 625 |
- </use> |
| 626 |
- <use> |
| 627 |
<flag name="mic">Install the libraries needed for supporting Intel Many Integrated Core (Xeon Phi)</flag> |
| 628 |
</use> |
| 629 |
</pkgmetadata> |
| 630 |
|
| 631 |
diff --git a/sci-libs/trilinos/metadata.xml b/sci-libs/trilinos/metadata.xml |
| 632 |
index d409138..93012b9 100644 |
| 633 |
--- a/sci-libs/trilinos/metadata.xml |
| 634 |
+++ b/sci-libs/trilinos/metadata.xml |
| 635 |
@@ -27,8 +27,10 @@ |
| 636 |
<flag name="hdf5">Add support for hdf5 (<pkg>sci-libs/hdf5</pkg>)</flag> |
| 637 |
<flag name="hypre">Add support for hypre (<pkg>sci-libs/hypre</pkg>)</flag> |
| 638 |
<flag name="matio">Add support for matio (<pkg>sci-libs/matio</pkg>)</flag> |
| 639 |
- <flag name="metis">Add support for metis (<pkg>sci-libs/(par)metis</pkg>)</flag> |
| 640 |
- <flag name="mkl">Add support for mkl (<pkg>sci/libs/mkl</pkg>)</flag> |
| 641 |
+ <flag name="metis"> |
| 642 |
+ Add support for metis (<pkg>sci-libs/metis</pkg> or <pkg>sci-libs/parmetis</pkg>) |
| 643 |
+ </flag> |
| 644 |
+ <flag name="mkl">Add support for mkl (<pkg>sci-libs/mkl</pkg>)</flag> |
| 645 |
<flag name="mumps">Add support for mumps (<pkg>sci-libs/mumps</pkg>)</flag> |
| 646 |
<flag name="netcdf">Add support for netcdf (<pkg>sci-libs/netcdf</pkg>)</flag> |
| 647 |
<flag name="petsc">Add support for petsc (<pkg>sci-mathematics/petsc</pkg>)</flag> |
| 648 |
@@ -40,6 +42,6 @@ |
| 649 |
<flag name="taucs">Add support for taucs (<pkg>sci-libs/taucs</pkg>)</flag> |
| 650 |
<flag name="tbb">Add support for threading building blocks library (<pkg>dev-cpp/tbb</pkg>)</flag> |
| 651 |
<flag name="tvmet">Add support for tvmet (<pkg>dev-libs/tvmet</pkg>)</flag> |
| 652 |
- <flag name="yaml">Add support for yaml (<pkg>dev-cpp-yaml</pkg>)</flag> |
| 653 |
+ <flag name="yaml">Add support for yaml (<pkg>dev-cpp/yaml</pkg>)</flag> |
| 654 |
</use> |
| 655 |
</pkgmetadata> |
| 656 |
|
| 657 |
diff --git a/sci-physics/abinit/metadata.xml b/sci-physics/abinit/metadata.xml |
| 658 |
index b204135..06b80e8 100644 |
| 659 |
--- a/sci-physics/abinit/metadata.xml |
| 660 |
+++ b/sci-physics/abinit/metadata.xml |
| 661 |
@@ -19,70 +19,40 @@ ABINIT code, different utility programs are provided. |
| 662 |
</longdescription> |
| 663 |
<use> |
| 664 |
<flag name="atompaw">Enable support for atompaw, a Projector Augmented Waves atomic data generator</flag> |
| 665 |
- </use> |
| 666 |
- <use> |
| 667 |
<flag name="bigdft">Enable support for BigDFT, DFT package using wavelet basis set</flag> |
| 668 |
- </use> |
| 669 |
- <use> |
| 670 |
<flag name="cuda">Enable support for nVidia CUDA</flag> |
| 671 |
- </use> |
| 672 |
- <use> |
| 673 |
<flag name="cuda-double"> |
| 674 |
Enable support for double precision nVidia CUDA |
| 675 |
</flag> |
| 676 |
- </use> |
| 677 |
- <use> |
| 678 |
<flag name="etsf_io"> |
| 679 |
Enable support for reading and writing the European Theoretical |
| 680 |
Spectroscopy facility (ETSF) file format. |
| 681 |
</flag> |
| 682 |
- </use> |
| 683 |
- <use> |
| 684 |
<flag name="fftw-threads"> |
| 685 |
Use the threaded (openMP or pthreads) version of <pkg>sci-libs/fftw</pkg> |
| 686 |
</flag> |
| 687 |
- </use> |
| 688 |
- <use> |
| 689 |
<flag name="fftw-mpi"> |
| 690 |
Use the MPI version of <pkg>sci-libs/fftw</pkg> (always with either openMP or pthreads too) |
| 691 |
</flag> |
| 692 |
- </use> |
| 693 |
- <use> |
| 694 |
<flag name="fox">Enable support for FoX Fortran XML library</flag> |
| 695 |
- </use> |
| 696 |
- <use> |
| 697 |
<flag name="levmar"> |
| 698 |
Enable support for <pkg>sci-libs/levmar</pkg>, |
| 699 |
the Levenberg-Marquardt least-squares optimisation |
| 700 |
</flag> |
| 701 |
- </use> |
| 702 |
- <use> |
| 703 |
<flag name="libabinit"> |
| 704 |
Build the libabinit used by <pkg>sci-libs/bigdft</pkg> |
| 705 |
(usage not tested yet, circular dependency not resolved) |
| 706 |
</flag> |
| 707 |
- </use> |
| 708 |
- <use> |
| 709 |
<flag name="libxc">Enable support for libxc, an exchange-correlation potentials library</flag> |
| 710 |
- </use> |
| 711 |
- <use> |
| 712 |
<flag name="lotf">Activate the Learn on The Fly method (LOTF) for Molecular Dynamics</flag> |
| 713 |
- </use> |
| 714 |
- <use> |
| 715 |
<flag name="scalapack"> |
| 716 |
Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing |
| 717 |
</flag> |
| 718 |
- </use> |
| 719 |
- <use> |
| 720 |
<flag name="scripts">Install helper scripts, mostly Python</flag> |
| 721 |
- </use> |
| 722 |
- <use> |
| 723 |
<flag name="vdwxc"> |
| 724 |
Activate van der Waals exchange-correlation correction. Since 7.4.0 |
| 725 |
no longer optional |
| 726 |
</flag> |
| 727 |
- </use> |
| 728 |
- <use> |
| 729 |
<flag name="wannier"> |
| 730 |
Enable support for wannier90, a maximally localized Wannier functions (MLWFs) calculator |
| 731 |
</flag> |
| 732 |
|
| 733 |
diff --git a/sci-physics/atompaw/metadata.xml b/sci-physics/atompaw/metadata.xml |
| 734 |
index a071550..897bf52 100644 |
| 735 |
--- a/sci-physics/atompaw/metadata.xml |
| 736 |
+++ b/sci-physics/atompaw/metadata.xml |
| 737 |
@@ -10,12 +10,10 @@ |
| 738 |
</maintainer> |
| 739 |
<use> |
| 740 |
<flag name="libxc">Enable support for libxc, an exchange-correlation potentials library</flag> |
| 741 |
- </use> |
| 742 |
- <use> |
| 743 |
<flag name="longplot"> |
| 744 |
Patch the sources to plot functions all over the space considered, |
| 745 |
not just up to the matching radius plus 50 grid points. May be useless |
| 746 |
or even harmful. |
| 747 |
- </flag> |
| 748 |
+ </flag> |
| 749 |
</use> |
| 750 |
</pkgmetadata> |
| 751 |
|
| 752 |
diff --git a/sci-physics/bigdft/metadata.xml b/sci-physics/bigdft/metadata.xml |
| 753 |
index a687c58..f3648be 100644 |
| 754 |
--- a/sci-physics/bigdft/metadata.xml |
| 755 |
+++ b/sci-physics/bigdft/metadata.xml |
| 756 |
@@ -10,22 +10,14 @@ BigDFT is a DFT massively parallel electronic structure code (GPL license) using |
| 757 |
</longdescription> |
| 758 |
<use> |
| 759 |
<flag name="cuda">Enable support for nVidia CUDA GPU acceleration</flag> |
| 760 |
- </use> |
| 761 |
- <use> |
| 762 |
<flag name="etsf_io"> |
| 763 |
Enable support for reading and writing the European Theoretical |
| 764 |
Spectroscopy facility (ETSF) file format. |
| 765 |
</flag> |
| 766 |
- </use> |
| 767 |
- <use> |
| 768 |
<flag name="glib"> |
| 769 |
Compile with GLib Object System support |
| 770 |
</flag> |
| 771 |
- </use> |
| 772 |
- <use> |
| 773 |
<flag name="opencl">Enable support for OpenCL GPU acceleration</flag> |
| 774 |
- </use> |
| 775 |
- <use> |
| 776 |
<flag name="scalapack"> |
| 777 |
Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing |
| 778 |
</flag> |
| 779 |
|
| 780 |
diff --git a/sci-physics/elk/metadata.xml b/sci-physics/elk/metadata.xml |
| 781 |
index 9357a96..7246d70 100644 |
| 782 |
--- a/sci-physics/elk/metadata.xml |
| 783 |
+++ b/sci-physics/elk/metadata.xml |
| 784 |
@@ -12,13 +12,9 @@ Elk is an all-electron full-potential linearised augmented-plane wave (FP-LAPW) |
| 785 |
<flag name="libxc"> |
| 786 |
Use sci-libs/libxc library of exchange-correlation functionals by ETSF. |
| 787 |
</flag> |
| 788 |
- </use> |
| 789 |
- <use> |
| 790 |
<flag name="perl"> |
| 791 |
Install perl scripts. |
| 792 |
</flag> |
| 793 |
- </use> |
| 794 |
- <use> |
| 795 |
<flag name="python"> |
| 796 |
Install python scripts. |
| 797 |
</flag> |
| 798 |
|
| 799 |
diff --git a/sys-cluster/hpl/metadata.xml b/sys-cluster/hpl/metadata.xml |
| 800 |
index 6f14b2f..f3834ba 100644 |
| 801 |
--- a/sys-cluster/hpl/metadata.xml |
| 802 |
+++ b/sys-cluster/hpl/metadata.xml |
| 803 |
@@ -1,11 +1,6 @@ |
| 804 |
<?xml version="1.0" encoding="UTF-8"?> |
| 805 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 806 |
<pkgmetadata> |
| 807 |
- <maintainer type="unknown"> |
| 808 |
- <email>tantive@g.o</email> |
| 809 |
- <name>Michael Imhof</name> |
| 810 |
- <description>Release manager, patch manager</description> |
| 811 |
- </maintainer> |
| 812 |
<maintainer type="project"> |
| 813 |
<email>cluster@g.o</email> |
| 814 |
<name>Gentoo Cluster Project</name> |
Archives