[gentoo-commits] proj/sci:master commit in: sci-biology/artemis/

[Martin Mokrejs]

commit:     11ae7cf4d443b53e4a1f90391c0a743ed5698a6a
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb  7 23:44:33 2012 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb  7 23:44:33 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=11ae7cf4

sci-biology/artemis: adjust ebuild based on upstream providing a Makefile

(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)

---
 sci-biology/artemis/ChangeLog           |    4 ++++
 sci-biology/artemis/artemis-9999.ebuild |    8 ++++++--
 2 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/sci-biology/artemis/ChangeLog b/sci-biology/artemis/ChangeLog
index 8a33496..a87b1e4 100644
--- a/sci-biology/artemis/ChangeLog
+++ b/sci-biology/artemis/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  07 Feb 2012; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  artemis-9999.ebuild:
+  adjust ebuild based on upstream providing a Makefile
+
 *artemis-9999 (08 Jan 2012)
 
   08 Jan 2012; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>

diff --git a/sci-biology/artemis/artemis-9999.ebuild b/sci-biology/artemis/artemis-9999.ebuild
index ff8d52d..4739ad8 100644
--- a/sci-biology/artemis/artemis-9999.ebuild
+++ b/sci-biology/artemis/artemis-9999.ebuild
@@ -24,16 +24,20 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
 
+# uses its own BamView
 DEPEND="sci-biology/samtools
-		sci-biology/bamview
 		>=virtual/jdk-1.5
 		>=dev-java/sun-jdk-1.5
 		dev-java/ant-core"
 RDEPEND="${DEPEND}
 		>=virtual/jre-1.5"
 
+# http://www.mail-archive.com/artemis-users@×××××××××.uk/msg00551.html
+# http://www.mail-archive.com/artemis-users@×××××××××.uk/msg00561.html
+# http://gmod.org/wiki/Artemis-Chado_Integration_Tutorial
 src_compile() {
-	ant compile || die
+	emake || die
+	# ant compile || die
 
 	einfo "Need to figure out where does the GeneBuilder application come from so that one could use Chado for automated gene prediction pipeline"
 }