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commit: 9b4464259353a242d2c68276203bcb955a307fd6 |
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Author: Kacper Kowalik <xarthisius <AT> gentoo <DOT> org> |
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AuthorDate: Sat Dec 3 22:12:00 2016 +0000 |
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Commit: Kacper Kowalik <xarthisius <AT> gentoo <DOT> org> |
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CommitDate: Sat Dec 3 22:12:47 2016 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9b446425 |
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|
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sci-libs/hdf5: version bump |
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|
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Fixes security bugs: #601404, #601408, #601414, #601420 |
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|
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Package-Manager: portage-2.3.2 |
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|
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sci-libs/hdf5/Manifest | 1 + |
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sci-libs/hdf5/hdf5-1.8.18.ebuild | 112 +++++++++++++++++++++++++++++++++++++++ |
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2 files changed, 113 insertions(+) |
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|
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diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest |
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index c2a1a58..72b6e9a 100644 |
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--- a/sci-libs/hdf5/Manifest |
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+++ b/sci-libs/hdf5/Manifest |
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@@ -1,3 +1,4 @@ |
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DIST hdf5-1.8.14.tar.bz2 9503743 SHA256 53722cb9f5977af2908f92fc1a3f8c597800a5cb448cfe5c75060d6335bb9bab SHA512 c4f0bb01df7bef9cd29c42ec2e27f4bd27c3e059cf18f1285c583e92b94ef799f8a29ec85c17bab12e47a69626851fbda4b8d74543266b01aa2cffc42cde4fea WHIRLPOOL 646d44d446e2bd2855567046ca00f302e02d39880a77f2d75fd6231ad74692c07910c8670ffa5e02f2922e4e28c5a4afd06f907ac5950615dd328c3e7346f578 |
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DIST hdf5-1.8.15-patch1.tar.bz2 10006036 SHA256 a5afc630c4443547fff15e9637b5b10404adbed4c00206d89517d32d6668fb32 SHA512 380c06f3cab469351d6ddc940c7cdffd5bd20a74e69cb4d549989bec5f130dadae11c04928ead7eea0200a175fc45a042d068a752d8a9c19a35c3a6912a147bd WHIRLPOOL 0c4c918eea3b70a2c4dea2098f24ddb612af6bf026749144dae19380f60de9d4123acd3c4bf324a1a313e4fae1d7874de48afd9e6720bbcc3c4f1fb1c1bc0288 |
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DIST hdf5-1.8.17.tar.bz2 10030234 SHA256 fc35dd8fd8d398de6b525b27cc111c21fc79795ad6db1b1f12cb15ed1ee8486a SHA512 b0fe630b98a83470c48443215b7073fd22c4390cc459127a4c9554682ae8aec215017c7f34adb8494da4b31fabe6580e9d1b63eddb949432d595e99705c0bbd1 WHIRLPOOL 64e508df74aca518be918dbac10db653004f254779e413ee501a7d550892e6baaa56a0891af28a88d419fa06aa3b06a3c213f45e99b7e2bafc7a9d98e9fe4337 |
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+DIST hdf5-1.8.18.tar.bz2 10081294 SHA256 01c6deadf4211f86922400da82c7a8b5b50dc8fc1ce0b5912de3066af316a48c SHA512 01f6d14bdd3be2ced9c63cc9e1820cd7ea11db649ff9f3a3055c18c4b0fffe777fd23baad536e3bce31c4d76fe17db64a3972762e1bb4d232927c1ca140e72b2 WHIRLPOOL c1ea97aa30ded9f3129edf47cfda3b7e371aa21fcb2fc409005818f69ed0f0ac41a19e28ec38a5da2c417ef98033f197292169c88f7db81dd94244b016ab2595 |
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|
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diff --git a/sci-libs/hdf5/hdf5-1.8.18.ebuild b/sci-libs/hdf5/hdf5-1.8.18.ebuild |
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new file mode 100644 |
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index 00000000..db192e0 |
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--- /dev/null |
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+++ b/sci-libs/hdf5/hdf5-1.8.18.ebuild |
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@@ -0,0 +1,112 @@ |
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+# Copyright 1999-2016 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Id$ |
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+ |
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+EAPI=5 |
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+ |
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+FORTRAN_NEEDED=fortran |
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+AUTOTOOLS_AUTORECONF=1 |
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+ |
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+inherit autotools-utils eutils fortran-2 flag-o-matic toolchain-funcs multilib |
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+ |
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+MY_P=${PN}-${PV/_p/-patch} |
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+ |
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+DESCRIPTION="General purpose library and file format for storing scientific data" |
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+HOMEPAGE="http://www.hdfgroup.org/HDF5/" |
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+#SRC_URI="https://support.hdfgroup.org/ftp/HDF5/releases/${MY_P}/src/${MY_P}.tar.bz2" |
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+# TODO: return to proper SRC_URI once upstream fixes their release |
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+SRC_URI="https://support.hdfgroup.org/ftp/HDF5/current18/src/${MY_P}.tar.bz2" |
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+ |
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+LICENSE="NCSA-HDF" |
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+SLOT="0/${PV%%_p*}" |
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+KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux" |
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+IUSE="cxx debug examples fortran fortran2003 +hl mpi static-libs szip threads zlib" |
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+ |
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+REQUIRED_USE=" |
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+ threads? ( !cxx !mpi !fortran !hl ) |
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+ fortran2003? ( fortran )" |
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+ |
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+RDEPEND=" |
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+ mpi? ( virtual/mpi[romio] ) |
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+ szip? ( virtual/szip ) |
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+ zlib? ( sys-libs/zlib:0= )" |
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+ |
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+DEPEND="${RDEPEND} |
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+ sys-devel/libtool:2 |
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+ >=sys-devel/autoconf-2.69" |
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+ |
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+S="${WORKDIR}/${MY_P}" |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch |
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+ "${FILESDIR}"/${PN}-1.8.9-mpicxx.patch |
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+ "${FILESDIR}"/${PN}-1.8.13-no-messing-ldpath.patch |
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+ "${FILESDIR}"/${PN}-1.8.15-implicits.patch |
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+) |
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+ |
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+pkg_setup() { |
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+ tc-export CXX CC AR # workaround for bug 285148 |
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+ if use fortran; then |
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+ use fortran2003 && FORTRAN_STANDARD=2003 |
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+ fortran-2_pkg_setup |
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+ fi |
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+ if use mpi; then |
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+ if has_version 'sci-libs/hdf5[-mpi]'; then |
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+ ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail." |
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+ ewarn "Try to uninstall the current hdf5 prior to enabling mpi support." |
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+ fi |
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+ export CC=mpicc |
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+ use fortran && export FC=mpif90 |
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+ if use cxx ; then |
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+ export CXX=mpicxx |
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+ ewarn "USE='mpi cxx' requires a configuration unsupported by upstream. Use at your own risk." |
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+ ewarn "In particular, the C++ API is not parallel safe." |
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+ fi |
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+ elif has_version 'sci-libs/hdf5[mpi]'; then |
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+ ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail." |
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+ ewarn "Try to uninstall the current hdf5 prior to disabling mpi support." |
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+ fi |
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+} |
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+ |
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+src_prepare() { |
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+ # respect gentoo examples directory |
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+ sed \ |
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+ -e "s:hdf5_examples:doc/${PF}/examples:g" \ |
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+ -i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die |
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+ sed \ |
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+ -e '/docdir/d' \ |
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+ -i config/commence.am || die |
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+ if ! use examples; then |
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+ sed -e '/^install:/ s/install-examples//' \ |
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+ -i Makefile.am || die #409091 |
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+ fi |
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+ # enable shared libs by default for h5cc config utility |
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+ sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in || die |
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+ # bug #419677 |
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+ use prefix && \ |
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+ append-ldflags -Wl,-rpath,"${EPREFIX}"/usr/$(get_libdir) \ |
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+ -Wl,-rpath,"${EPREFIX}"/$(get_libdir) |
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+ autotools-utils_src_prepare |
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+} |
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+ |
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+src_configure() { |
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+ local myeconfargs=( |
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+ --enable-production |
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+ --docdir="${EPREFIX}"/usr/share/doc/${PF} |
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+ --enable-deprecated-symbols |
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+ $(use_enable prefix sharedlib-rpath) |
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+ $(use_enable debug debug all) |
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+ $(use_enable debug codestack) |
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+ $(use_enable cxx) |
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+ $(use_enable fortran) |
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+ $(use_enable fortran2003) |
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+ $(use_enable hl) |
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+ $(use_enable mpi parallel) |
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+ $(use_enable threads threadsafe) |
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+ $(use_with szip szlib) |
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+ $(use_with threads pthread) |
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+ $(use_with zlib) |
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+ $(use mpi && use cxx && echo --enable-unsupported) |
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+ ) |
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+ autotools-utils_src_configure |
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+} |