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commit: ffb0d2032a35ca86e9f613f2a99bf8f09f2373b3 |
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Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue Feb 7 13:04:27 2012 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue Feb 7 13:04:27 2012 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ffb0d203 |
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|
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sci-biology/OBO-Edit: more attempts to get rid of sandbox ACCESS VIOLATION SUMMARY errors |
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|
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(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit) |
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|
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--- |
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sci-biology/OBO-Edit/ChangeLog | 8 +++- |
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sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild | 59 ++++++++++++++++++++++++++ |
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sci-biology/OBO-Edit/files/response.varfile | 8 +++- |
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3 files changed, 72 insertions(+), 3 deletions(-) |
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|
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diff --git a/sci-biology/OBO-Edit/ChangeLog b/sci-biology/OBO-Edit/ChangeLog |
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index 77732a7..1378d6b 100644 |
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--- a/sci-biology/OBO-Edit/ChangeLog |
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+++ b/sci-biology/OBO-Edit/ChangeLog |
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@@ -1,7 +1,13 @@ |
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# ChangeLog for sci-biology/OBO-Edit |
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-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
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+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
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# $Header: $ |
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|
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+*OBO-Edit-2.1.1.6 (07 Feb 2012) |
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+ |
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+ 07 Feb 2012; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ +OBO-Edit-2.1.1.6.ebuild, files/response.varfile: |
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+ more attempts to get rid of sandbox ACCESS VIOLATION SUMMARY errors |
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+ |
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*OBO-Edit-2.1.0 (26 Dec 2011) |
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|
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26 Dec 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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|
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diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild |
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new file mode 100644 |
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index 0000000..30d6980 |
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--- /dev/null |
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+++ b/sci-biology/OBO-Edit/OBO-Edit-2.1.1.6.ebuild |
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@@ -0,0 +1,59 @@ |
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+# Copyright 1999-2012 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Header: $ |
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+ |
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+EAPI=4 |
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+ |
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+inherit toolchain-funcs versionator java-pkg-2 |
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+ |
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+# MY_PV=$(replace_all_version_separators '-') |
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+MY_PV="oboedit_2_1_1-b6" |
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+MY_VER="2.1.1-b6" |
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+MY_PV=$(replace_all_version_separators '-') |
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+ |
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+DESCRIPTION="Java-based editor optimized for the OBO biological ontology file format" |
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+HOMEPAGE="http://www.oboedit.org/" |
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+SRC_URI="http://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/"${MY_VER}"/"${MY_PV}"_unix_install4j.sh -> "${PN}"_unix_install4j-"${PV}".sh |
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+ http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/"${MY_PV}"/ReleaseNotes-"${MY_VER}".txt -> "${PN}"_ReleaseNotes-"${PV}".txt" |
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+ |
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+LICENSE="OBO-Edit" # Artistic-like |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="" |
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+ |
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+DEPEND="app-arch/rpm2targz" |
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+RDEPEND="virtual/jre" |
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+ |
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+S="${WORKDIR}" |
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+ |
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+src_prepare(){ |
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+ cd "${S}" || die |
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+ mkdir -p "${D}"/opt/OBO-Edit2/.install4j || die "Cannot pre-create "${D}"/opt/OBO-Edit2/.install4j/" |
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+ mkdir -p "${D}"/usr/bin |
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+ |
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+ # /var/tmp/portage/sci-biology/OBO-Edit-2.1.1.6/image//opt/OBO-Edit2/.install4j/response.varfile |
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+ sed -e "s#\"\${D}\"#"${D}"#g" "${FILESDIR}"/response.varfile | \ |
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+ sed -e "s#\"\${TMPDIR}\"#"${TMPDIR}"#g" | \ |
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+ sed -e "s@×××.symlinkDir=/usr/local/bin@#sys.symlinkDir=/usr/local/bin@" > \ |
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+ "${D}"/opt/OBO-Edit2/.install4j/response.varfile || die "sed failed" |
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+ cp -r "${D}"/opt/OBO-Edit2/.install4j "${TMPDIR}" |
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+ |
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+ # for user root install4j writes into /opt/icedtea-bin-7.2.0/jre/.systemPrefs or whatever it |
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+ # found via JAVA_HOME or similar variables |
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+ # for other users it writes into $HOME/.java/.userPrefs/ |
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+ sed -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${TMPDIR}" -Dinstall4j.jvmDir="${TMPDIR}" -Dsys.symlinkDir="${D}"usr/bin@" -i "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh || die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found" |
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+ |
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+ chmod u+rx "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh |
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+ grep Duser "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh |
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+} |
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+ |
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+src_install(){ |
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+ cd "${S}" || die |
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+ cat "${TMPDIR}"/.install4j/response.varfile |
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+ chmod a-w "${TMPDIR}"/.install4j/response.varfile |
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+ INSTALL4J_KEEP_TEMP="yes" HOME="${TMPDIR}" "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh -q --varfile="${TMPDIR}"/.install4j/response.varfile --destination="${D}"/opt/OBO-Edit2 -dir "${D}"/opt/OBO-Edit2 || die "Failed to run the self-extracting "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh file" |
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+ find . -name firstrun -delete |
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+ find . -name .svn -exec rm -rf '{}' \; |
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+ |
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+ dodoc "${DISTDIR}"/"${PN}"_ReleaseNotes-"${PV}".txt |
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+} |
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|
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diff --git a/sci-biology/OBO-Edit/files/response.varfile b/sci-biology/OBO-Edit/files/response.varfile |
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index 149a4e2..8c4361d 100644 |
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--- a/sci-biology/OBO-Edit/files/response.varfile |
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+++ b/sci-biology/OBO-Edit/files/response.varfile |
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@@ -1,6 +1,10 @@ |
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-executeLauncherAction$Boolean=false |
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+#install4j response file for OBO-Edit2 2.1.1-b6 |
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+#Tue Feb 07 03:08:04 MET 2012 |
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+sys.component.89$Boolean=false |
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+createDesktopLinkAction$Boolean=false |
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+oboedit.memoryAlloc$Integer=3456 |
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sys.programGroupDisabled$Boolean=true |
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+sys.component.61$Boolean=true |
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sys.symlinkDir="${D}"usr/bin |
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sys.languageId=en |
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-sys.userHome="${D}"/../temp |
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sys.installationDir="${D}"opt/OBO-Edit2 |
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