Gentoo Archives: gentoo-commits

From: David Seifert <soap@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/fastx_toolkit/
Date: Wed, 10 Jan 2018 09:59:38
Message-Id: 1515578362.9f4aad23ebad4a4cbbf5c94eddd52c0ec59370c7.soap@gentoo
1 commit: 9f4aad23ebad4a4cbbf5c94eddd52c0ec59370c7
2 Author: David Seifert <soap <AT> gentoo <DOT> org>
3 AuthorDate: Wed Jan 10 09:58:38 2018 +0000
4 Commit: David Seifert <soap <AT> gentoo <DOT> org>
5 CommitDate: Wed Jan 10 09:59:22 2018 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9f4aad23
7
8 sci-biology/fastx_toolkit: Moved to main tree
9
10 .../fastx_toolkit/fastx_toolkit-0.0.14.ebuild | 32 ----------------------
11 sci-biology/fastx_toolkit/metadata.xml | 11 --------
12 2 files changed, 43 deletions(-)
13
14 diff --git a/sci-biology/fastx_toolkit/fastx_toolkit-0.0.14.ebuild b/sci-biology/fastx_toolkit/fastx_toolkit-0.0.14.ebuild
15 deleted file mode 100644
16 index 64feb239d..000000000
17 --- a/sci-biology/fastx_toolkit/fastx_toolkit-0.0.14.ebuild
18 +++ /dev/null
19 @@ -1,32 +0,0 @@
20 -# Copyright 1999-2014 Gentoo Foundation
21 -# Distributed under the terms of the GNU General Public License v2
22 -
23 -EAPI=5
24 -
25 -inherit autotools
26 -
27 -DESCRIPTION="Tools for Short Read FASTA/FASTQ file processing"
28 -HOMEPAGE="http://hannonlab.cshl.edu/fastx_toolkit"
29 -SRC_URI="https://github.com/agordon/fastx_toolkit/releases/download/"${PV}"/"${P}".tar.bz2"
30 -
31 -LICENSE="AGPL-3"
32 -SLOT="0"
33 -KEYWORDS="~amd64 ~x86"
34 -IUSE=""
35 -
36 -DEPEND=""
37 -RDEPEND="${DEPEND}
38 - dev-perl/PerlIO-gzip
39 - dev-perl/GDGraph
40 - sys-apps/sed
41 - sci-visualization/gnuplot
42 - sci-biology/libgtextutils"
43 -
44 -src_prepare() {
45 - # remove pointless installation of generic autoconf-archive m4 macros
46 - # causing file collisions with sys-devel/autoconf-archive
47 - rm m4/Makefile.am || die
48 - sed -i -e 's/m4 //g' Makefile.am || die
49 -
50 - eautoreconf
51 -}
52
53 diff --git a/sci-biology/fastx_toolkit/metadata.xml b/sci-biology/fastx_toolkit/metadata.xml
54 deleted file mode 100644
55 index 880cea016..000000000
56 --- a/sci-biology/fastx_toolkit/metadata.xml
57 +++ /dev/null
58 @@ -1,11 +0,0 @@
59 -<?xml version="1.0" encoding="UTF-8"?>
60 -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
61 -<pkgmetadata>
62 - <maintainer type="project">
63 - <email>sci@g.o</email>
64 - <name>Gentoo Science Project</name>
65 - </maintainer>
66 - <upstream>
67 - <remote-id type="github">agordon/fastx_toolkit</remote-id>
68 - </upstream>
69 -</pkgmetadata>