| 1 |
commit: 0f0dfd5089d75186aff4f1e557eabedfcf0930e8 |
| 2 |
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 3 |
AuthorDate: Fri Jul 29 20:44:32 2016 +0000 |
| 4 |
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 5 |
CommitDate: Fri Jul 29 20:44:32 2016 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0f0dfd50 |
| 7 |
|
| 8 |
dev-perl/Bio-DB-HTS: new package, needs more fixes |
| 9 |
|
| 10 |
Package-Manager: portage-2.3.0 |
| 11 |
|
| 12 |
dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild | 28 ++++++++++++++++++++++++++++ |
| 13 |
dev-perl/Bio-DB-HTS/metadata.xml | 12 ++++++++++++ |
| 14 |
2 files changed, 40 insertions(+) |
| 15 |
|
| 16 |
diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild |
| 17 |
new file mode 100644 |
| 18 |
index 0000000..d450118 |
| 19 |
--- /dev/null |
| 20 |
+++ b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild |
| 21 |
@@ -0,0 +1,28 @@ |
| 22 |
+# Copyright 1999-2016 Gentoo Foundation |
| 23 |
+# Distributed under the terms of the GNU General Public License v2 |
| 24 |
+# $Id$ |
| 25 |
+ |
| 26 |
+EAPI=5 |
| 27 |
+ |
| 28 |
+MODULE_AUTHOR="RISHIDEV" |
| 29 |
+inherit perl-module multilib toolchain-funcs |
| 30 |
+ |
| 31 |
+DESCRIPTION="Enable rapid access to bgzipped FASTA files" |
| 32 |
+ |
| 33 |
+#LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 34 |
+SLOT="0" |
| 35 |
+KEYWORDS="" |
| 36 |
+IUSE="" |
| 37 |
+ |
| 38 |
+RDEPEND="" |
| 39 |
+DEPEND="${RDEPEND} |
| 40 |
+ dev-perl/Module-Build |
| 41 |
+ sci-libs/htslib" |
| 42 |
+ |
| 43 |
+SRC_TEST="do" |
| 44 |
+ |
| 45 |
+src_prepare(){ |
| 46 |
+ # https://github.com/Ensembl/Bio-HTS/issues/15 |
| 47 |
+ # https://github.com/Ensembl/Bio-HTS/issues/30 |
| 48 |
+ HTSLIB_LIBDIR="${EPREFIX}"/"$(get_libdir)" HTSLIB_INCDIR="/usr/include/htslib" perl-module_src_prepare |
| 49 |
+} |
| 50 |
|
| 51 |
diff --git a/dev-perl/Bio-DB-HTS/metadata.xml b/dev-perl/Bio-DB-HTS/metadata.xml |
| 52 |
new file mode 100644 |
| 53 |
index 0000000..f68a1b6 |
| 54 |
--- /dev/null |
| 55 |
+++ b/dev-perl/Bio-DB-HTS/metadata.xml |
| 56 |
@@ -0,0 +1,12 @@ |
| 57 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 58 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 59 |
+<pkgmetadata> |
| 60 |
+ <maintainer type="person"> |
| 61 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 62 |
+ <name>Martin Mokrejs</name> |
| 63 |
+ </maintainer> |
| 64 |
+ <maintainer type="project"> |
| 65 |
+ <email>sci-biology@g.o</email> |
| 66 |
+ <name>Gentoo Biology Project</name> |
| 67 |
+ </maintainer> |
| 68 |
+</pkgmetadata> |
Archives