[gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: Bio-SamTools-1.390.0-r1.ebuild ChangeLog Bio-SamTools-1.390.0.ebuild

[Ian Stakenvicius (axs)]

axs         14/08/26 19:37:47

  Modified:             ChangeLog
  Added:                Bio-SamTools-1.390.0-r1.ebuild
  Removed:              Bio-SamTools-1.390.0.ebuild
  Log:
  bumped EAPI to 5 to help with dev-lang/perl upgrade
  
  (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)

Revision  Changes    Path
1.14                 dev-perl/Bio-SamTools/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.14&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.14&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.13&r2=1.14

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- ChangeLog	24 May 2014 07:37:58 -0000	1.13
+++ ChangeLog	26 Aug 2014 19:37:47 -0000	1.14
@@ -1,6 +1,12 @@
 # ChangeLog for dev-perl/Bio-SamTools
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.13 2014/05/24 07:37:58 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.14 2014/08/26 19:37:47 axs Exp $
+
+*Bio-SamTools-1.390.0-r1 (26 Aug 2014)
+
+  26 Aug 2014; Ian Stakenvicius (_AxS_) <axs@g.o>
+  +Bio-SamTools-1.390.0-r1.ebuild, -Bio-SamTools-1.390.0.ebuild:
+  bumped EAPI to 5 to help with dev-lang/perl upgrade
 
   24 May 2014; Pacho Ramos <pacho@g.o> metadata.xml:
   Cleanup due #199047



1.1                  dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild?rev=1.1&content-type=text/plain

Index: Bio-SamTools-1.390.0-r1.ebuild
===================================================================
# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild,v 1.1 2014/08/26 19:37:47 axs Exp $

EAPI=5

MODULE_AUTHOR=LDS
MODULE_VERSION=1.39
inherit perl-module

DESCRIPTION="Read SAM/BAM database files"

SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

RDEPEND="sci-biology/bioperl
	>=sci-biology/samtools-0.1.16"
DEPEND="${RDEPEND}
	virtual/perl-ExtUtils-CBuilder
	virtual/perl-Module-Build
"

SRC_TEST=do

src_prepare() {
	sed \
		-e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \
		-e 's|my $LibFile    = "libbam.a";|my $LibFile    = "libbam.so";|' \
		-i Build.PL || die
	sed \
		-e 's|#include "bam.h"|#include "bam/bam.h"|' \
		-e 's|#include "sam.h"|#include "bam/sam.h"|' \
		-e 's|#include "khash.h"|#include "bam/khash.h"|' \
		-e 's|#include "faidx.h"|#include "bam/faidx.h"|' \
		-i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die

	perl-module_src_prepare
}