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commit: 0eb34b26dabe226e954c42a2a914a0d522a45d2c |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Sat Feb 25 17:54:59 2017 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Sat Feb 25 19:18:08 2017 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0eb34b26 |
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|
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sci-biology/amap: Modernise to EAPI 6 |
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|
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Package-Manager: Portage-2.3.3, Repoman-2.3.1 |
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|
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sci-biology/amap/amap-2.2-r3.ebuild | 57 +++++++++++++++++++++++++++++++++++++ |
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1 file changed, 57 insertions(+) |
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|
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diff --git a/sci-biology/amap/amap-2.2-r3.ebuild b/sci-biology/amap/amap-2.2-r3.ebuild |
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new file mode 100644 |
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index 0000000000..68af0d66ac |
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--- /dev/null |
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+++ b/sci-biology/amap/amap-2.2-r3.ebuild |
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@@ -0,0 +1,57 @@ |
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+# Copyright 1999-2017 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Id$ |
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+ |
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+EAPI=6 |
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+ |
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+inherit java-pkg-opt-2 java-ant-2 toolchain-funcs |
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+ |
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+MY_P=${PN}.${PV} |
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+ |
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+DESCRIPTION="Protein multiple-alignment-based sequence annealing" |
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+HOMEPAGE="http://bio.math.berkeley.edu/amap/" |
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+SRC_URI="http://baboon.math.berkeley.edu/${PN}/download/${MY_P}.tar.gz" |
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+ |
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+LICENSE="GPL-2" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="java" |
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+ |
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+RDEPEND="java? ( >=virtual/jre-1.5 )" |
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+DEPEND="java? ( >=virtual/jdk-1.5 )" |
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+ |
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+S=${WORKDIR}/${PN}-align |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}"/${P}-makefile.patch |
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+ "${FILESDIR}"/${P}-includes.patch |
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+) |
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+ |
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+src_prepare() { |
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+ default |
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+ java-pkg-opt-2_src_prepare |
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+} |
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+ |
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+src_compile() { |
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+ emake -C align CXX="$(tc-getCXX)" OPT_CXXFLAGS="${CXXFLAGS}" |
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+ |
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+ if use java; then |
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+ pushd display >/dev/null || die |
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+ eant -Ddisplay all || die |
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+ popd >/dev/null || die |
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+ fi |
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+} |
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+ |
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+src_install() { |
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+ dobin align/${PN} |
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+ |
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+ dodoc align/{README,PROBCONS.README} |
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+ |
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+ insinto /usr/share/${PN}/examples |
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+ doins -r examples/. |
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+ |
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+ if use java; then |
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+ java-pkg_newjar display/AmapDisplay.jar amapdisplay.jar |
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+ java-pkg_dolauncher amapdisplay --jar amapdisplay.jar |
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+ fi |
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+} |