Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/
Date: Mon, 02 Jun 2014 12:08:17
Message-Id: 1401710818.cb2f6200cc1de77fcdb6b3ac1b5b1d835ab4225f.mmokrejs@gentoo
1 commit: cb2f6200cc1de77fcdb6b3ac1b5b1d835ab4225f
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Mon Jun 2 12:06:58 2014 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Mon Jun 2 12:06:58 2014 +0000
6 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=cb2f6200
7
8 sci-biology/ncbi-tools++: added a note about a taxonomy database add-on not yet installed by Gentoo
9
10 ---
11 sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 3 +++
12 sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 4 ++++
13 sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 5 +++++
14 3 files changed, 12 insertions(+)
15
16 diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
17 index d4a5085..3b19a93 100644
18 --- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
19 +++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
20 @@ -18,6 +18,8 @@ SRC_URI="
21 ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz"
22 # http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
23
24 +# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz
25 +# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html
26 LICENSE="public-domain"
27 SLOT="0"
28 IUSE="
29 @@ -271,6 +273,7 @@ src_configure() {
30 # --without-static \
31 # --with-dll \
32 # --with-mt \
33 +# --with-openmp \
34 # --with-lfs \
35 # --prefix="${ED}"/usr \
36 # --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
37
38 diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
39 index 7b3ba9e..89ae176 100644
40 --- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
41 +++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
42 @@ -18,6 +18,9 @@ SRC_URI="
43 ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz"
44 # http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
45
46 +# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz
47 +# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html
48 +
49 LICENSE="public-domain"
50 SLOT="0"
51 IUSE="
52 @@ -281,6 +284,7 @@ src_configure() {
53 # --without-static \
54 # --with-dll \
55 # --with-mt \
56 +# --with-openmp \
57 # --with-lfs \
58 # --prefix="${ED}"/usr \
59 # --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
60
61 diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
62 index 2824e09..8020276 100644
63 --- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
64 +++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
65 @@ -18,6 +18,9 @@ SRC_URI="
66 ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz"
67 # http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
68
69 +# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz
70 +# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html
71 +
72 LICENSE="public-domain"
73 SLOT="0"
74 IUSE="berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X"
75 @@ -283,6 +286,8 @@ src_configure() {
76 --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
77 ${myconf} LDFLAGS="-Wl,--no-as-needed" \
78 || die
79 +
80 + # --with-openmp
81 }
82
83 src_compile() {