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commit: cb2f6200cc1de77fcdb6b3ac1b5b1d835ab4225f |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Mon Jun 2 12:06:58 2014 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Mon Jun 2 12:06:58 2014 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=cb2f6200 |
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|
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sci-biology/ncbi-tools++: added a note about a taxonomy database add-on not yet installed by Gentoo |
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|
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--- |
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sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 3 +++ |
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sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 4 ++++ |
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sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 5 +++++ |
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3 files changed, 12 insertions(+) |
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|
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diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild |
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index d4a5085..3b19a93 100644 |
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--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild |
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+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild |
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@@ -18,6 +18,8 @@ SRC_URI=" |
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ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz" |
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# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz" |
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|
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+# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz |
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+# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html |
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LICENSE="public-domain" |
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SLOT="0" |
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IUSE=" |
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@@ -271,6 +273,7 @@ src_configure() { |
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# --without-static \ |
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# --with-dll \ |
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# --with-mt \ |
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+# --with-openmp \ |
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# --with-lfs \ |
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# --prefix="${ED}"/usr \ |
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# --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \ |
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|
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diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild |
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index 7b3ba9e..89ae176 100644 |
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--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild |
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+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild |
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@@ -18,6 +18,9 @@ SRC_URI=" |
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ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz" |
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# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz" |
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|
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+# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz |
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+# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html |
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+ |
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LICENSE="public-domain" |
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SLOT="0" |
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IUSE=" |
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@@ -281,6 +284,7 @@ src_configure() { |
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# --without-static \ |
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# --with-dll \ |
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# --with-mt \ |
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+# --with-openmp \ |
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# --with-lfs \ |
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# --prefix="${ED}"/usr \ |
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# --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \ |
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|
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diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild |
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index 2824e09..8020276 100644 |
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--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild |
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+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild |
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@@ -18,6 +18,9 @@ SRC_URI=" |
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ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz" |
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# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz" |
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|
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+# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz |
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+# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html |
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+ |
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LICENSE="public-domain" |
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SLOT="0" |
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IUSE="berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X" |
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@@ -283,6 +286,8 @@ src_configure() { |
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--libdir="${ED}"/usr/$(get_libdir)/"${PN}" \ |
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${myconf} LDFLAGS="-Wl,--no-as-needed" \ |
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|| die |
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+ |
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+ # --with-openmp |
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} |
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|
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src_compile() { |