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commit: 5c73aaa78d02e3b384be3b52120625ed8b507e19 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Mon Mar 24 01:41:35 2014 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Mon Mar 24 01:41:35 2014 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5c73aaa7 |
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|
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sci-biology/freebayes: a new package skeleton; need to retrive from git in a recursive way |
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|
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--- |
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sci-biology/freebayes/ChangeLog | 10 ++++++++++ |
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sci-biology/freebayes/freebayes-9999.ebuild | 30 +++++++++++++++++++++++++++++ |
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sci-biology/freebayes/metadata.xml | 9 +++++++++ |
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3 files changed, 49 insertions(+) |
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|
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diff --git a/sci-biology/freebayes/ChangeLog b/sci-biology/freebayes/ChangeLog |
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new file mode 100644 |
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index 0000000..17424da |
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--- /dev/null |
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+++ b/sci-biology/freebayes/ChangeLog |
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@@ -0,0 +1,10 @@ |
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+# ChangeLog for sci-biology/freebayes |
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+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: $ |
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+ |
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+*freebayes-9999 (24 Mar 2014) |
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+ |
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+ 24 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ +freebayes-9999.ebuild, +metadata.xml: |
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+ a new package skeleton; need to retrive from git in a recursive way |
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+ |
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|
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diff --git a/sci-biology/freebayes/freebayes-9999.ebuild b/sci-biology/freebayes/freebayes-9999.ebuild |
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new file mode 100644 |
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index 0000000..0876efb |
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--- /dev/null |
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+++ b/sci-biology/freebayes/freebayes-9999.ebuild |
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@@ -0,0 +1,30 @@ |
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+# Copyright 1999-2014 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Header: $ |
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+ |
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+EAPI=5 |
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+ |
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+inherit eutils |
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+ |
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+[ "$PV" == "9999" ] && inherit git-2 |
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+ |
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+DESCRIPTION="Bayesian genetic variant detector designed to find small polymorphisms: SNPs, indels, MNPs and complex events" |
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+HOMEPAGE="https://github.com/ekg/freebayes" |
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+EGIT_REPO_URI="git://github.com/ekg/freebayes.git" |
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+ |
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+# need top checkout vcflib/ as well |
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+# |
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+# To build freebayes you must use git to also download its submodules. |
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+# Do so by downloading freebayes again using this command (note --recursive flag): |
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+# git clone --recursive git://github.com/ekg/freebayes.git |
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+# |
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+ |
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+LICENSE="MIT" |
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+SLOT="0" |
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+KEYWORDS="" |
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+IUSE="" |
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+ |
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+DEPEND="" |
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+RDEPEND="${DEPEND} |
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+ sci-biology/bamtools |
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+ sci-biology/samtools" |
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|
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diff --git a/sci-biology/freebayes/metadata.xml b/sci-biology/freebayes/metadata.xml |
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new file mode 100644 |
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index 0000000..2bc8930 |
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--- /dev/null |
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+++ b/sci-biology/freebayes/metadata.xml |
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@@ -0,0 +1,9 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <herd>sci-biology</herd> |
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+ <maintainer> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+</pkgmetadata> |