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| From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/mira: ChangeLog mira-3.0.5.ebuild |
| Date: | Wed, 05 May 2010 08:00:31 |
| Message-Id: | 20100505080006.14AE12950A@corvid.gentoo.org |
| 1 | weaver 10/05/05 08:00:05 |
| 2 | |
| 3 | Modified: ChangeLog |
| 4 | Added: mira-3.0.5.ebuild |
| 5 | Log: |
| 6 | Version bump |
| 7 | (Portage version: 2.2_rc67/cvs/Linux x86_64) |
| 8 | |
| 9 | Revision Changes Path |
| 10 | 1.8 sci-biology/mira/ChangeLog |
| 11 | |
| 12 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/ChangeLog?rev=1.8&view=markup |
| 13 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/ChangeLog?rev=1.8&content-type=text/plain |
| 14 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/ChangeLog?r1=1.7&r2=1.8 |
| 15 | |
| 16 | Index: ChangeLog |
| 17 | =================================================================== |
| 18 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v |
| 19 | retrieving revision 1.7 |
| 20 | retrieving revision 1.8 |
| 21 | diff -u -r1.7 -r1.8 |
| 22 | --- ChangeLog 18 Mar 2010 15:32:24 -0000 1.7 |
| 23 | +++ ChangeLog 5 May 2010 08:00:05 -0000 1.8 |
| 24 | @@ -1,6 +1,11 @@ |
| 25 | # ChangeLog for sci-biology/mira |
| 26 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
| 27 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.7 2010/03/18 15:32:24 weaver Exp $ |
| 28 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.8 2010/05/05 08:00:05 weaver Exp $ |
| 29 | + |
| 30 | +*mira-3.0.5 (05 May 2010) |
| 31 | + |
| 32 | + 05 May 2010; Andrey Kislyuk <weaver@g.o> +mira-3.0.5.ebuild: |
| 33 | + Version bump |
| 34 | |
| 35 | *mira-3.0.3 (18 Mar 2010) |
| 36 | |
| 37 | |
| 38 | |
| 39 | |
| 40 | 1.1 sci-biology/mira/mira-3.0.5.ebuild |
| 41 | |
| 42 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/mira-3.0.5.ebuild?rev=1.1&view=markup |
| 43 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/mira-3.0.5.ebuild?rev=1.1&content-type=text/plain |
| 44 | |
| 45 | Index: mira-3.0.5.ebuild |
| 46 | =================================================================== |
| 47 | # Copyright 1999-2010 Gentoo Foundation |
| 48 | # Distributed under the terms of the GNU General Public License v2 |
| 49 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.5.ebuild,v 1.1 2010/05/05 08:00:05 weaver Exp $ |
| 50 | |
| 51 | EAPI="2" |
| 52 | |
| 53 | MIRA_3RDPARTY_PV="17-04-2010" |
| 54 | |
| 55 | inherit base autotools |
| 56 | |
| 57 | DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" |
| 58 | HOMEPAGE="http://www.chevreux.org/projects_mira.html" |
| 59 | SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2 |
| 60 | mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2" |
| 61 | |
| 62 | LICENSE="GPL-2" |
| 63 | SLOT="0" |
| 64 | IUSE="doc" |
| 65 | KEYWORDS="~amd64 ~x86" |
| 66 | |
| 67 | CDEPEND=">=dev-libs/boost-1.35.0" |
| 68 | DEPEND="${CDEPEND} |
| 69 | dev-libs/expat |
| 70 | doc? ( >=app-text/texlive-core-2009 )" |
| 71 | RDEPEND="${CDEPEND}" |
| 72 | |
| 73 | src_prepare() { |
| 74 | find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die |
| 75 | epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch |
| 76 | AT_M4DIR="config/m4" eautoreconf |
| 77 | } |
| 78 | |
| 79 | src_compile() { |
| 80 | base_src_compile |
| 81 | if use doc; then emake -C doc clean docs || die; fi |
| 82 | } |
| 83 | |
| 84 | src_install() { |
| 85 | einstall || die |
| 86 | dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL |
| 87 | find doc/docs/man -type f | xargs doman |
| 88 | find doc/docs/texinfo -type f | xargs doinfo |
| 89 | dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl} |
| 90 | } |