Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: /
Date: Mon, 02 Dec 2013 16:21:49
Message-Id: 1386001222.3ab3adea4f5b74d90d9df714c3f76d5ed48180cb.jlec@gentoo
1 commit: 3ab3adea4f5b74d90d9df714c3f76d5ed48180cb
2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
3 AuthorDate: Mon Dec 2 16:20:22 2013 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Mon Dec 2 16:20:22 2013 +0000
6 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3ab3adea
7
8 Merge branch 'master' into zhou13-master
9
10 * master: (25 commits)
11 xdrfile got added to gx86
12 hpl: fix build with MKL blas and/or lapack libraries
13 [sci-visualization/yt] provide workaround for latest Forthon
14 [sci-visualization/yt] fix slots in CDEPEND
15 Tentative prefixification
16 Version bump: mne-python 0.7
17 Masked live yt
18 dev-python/Forthon: Version bump, keyworded for prefix
19 [sci-visualization/yt] version bump
20 sci-physics/geant-vmc: Version bump
21 dev-python/emcee: Version bump
22 sci-chemistry/coot: Update patch for current HEAD
23 Update PyQtGraph to 0.9.8. Support of python 3.3
24 sci-physics/lammps-20131123: Version bump.
25 sys-cluster/charm-6.6.0-rc1: Reorganized some variables.
26 sci-physics/tauola: new ebuild added
27 Add 1 more chunk for multifit/Makefile.am
28 ebuild cleanup
29 sci-misc/openfst: version bump, patch from Kaldi
30 sci-physics/mc-tester: ebuild improvements, thanks to jlec
31 ...
32
33
34 dev-python/Forthon/ChangeLog | 8 +-
35 ...Forthon-0.8.12.ebuild => Forthon-0.8.13.ebuild} | 4 +-
36 dev-python/Forthon/Manifest | 2 +-
37 .../files/Forthon-0.8.11-fix_options_parser.patch | 17 -
38 dev-python/Forthon/metadata.xml | 11 +
39 dev-python/emcee/ChangeLog | 7 +-
40 dev-python/emcee/Manifest | 1 +
41 .../{emcee-1.2.0.ebuild => emcee-2.0.0.ebuild} | 4 +-
42 dev-python/emcee/metadata.xml | 4 +-
43 dev-python/pyqtgraph/ChangeLog | 6 +
44 dev-python/pyqtgraph/Manifest | 2 +-
45 ...qtgraph-0.9.7.ebuild => pyqtgraph-0.9.8.ebuild} | 2 +-
46 eclass/alternatives-2.eclass | 2 +-
47 eclass/intel-sdp.eclass | 497 -----------------
48 licenses/CPC | 41 ++
49 profiles/package.mask | 2 +
50 sci-biology/mne-python/Manifest | 1 +
51 ...ne-python-9999.ebuild => mne-python-0.7.ebuild} | 8 +-
52 sci-chemistry/coot/ChangeLog | 3 +
53 sci-chemistry/coot/files/9999-pc.patch | 43 +-
54 sci-chemistry/xdrfile/ChangeLog | 21 -
55 sci-chemistry/xdrfile/Manifest | 1 -
56 sci-chemistry/xdrfile/metadata.xml | 9 -
57 sci-chemistry/xdrfile/xdrfile-1.1.1.ebuild | 23 -
58 sci-libs/gsl/files/gsl-1.16-cblas-external.patch | 13 +
59 sci-misc/openfst/ChangeLog | 6 +
60 sci-misc/openfst/Manifest | 2 +-
61 sci-misc/openfst/files/kaldi.patch | 599 +++++++++++++++++++++
62 .../{openfst-1.3.2.ebuild => openfst-1.3.4.ebuild} | 14 +-
63 sci-physics/geant-vmc/ChangeLog | 6 +
64 sci-physics/geant-vmc/Manifest | 2 +-
65 ...vmc-4.2.14a.ebuild => geant-vmc-4.2.14b.ebuild} | 0
66 sci-physics/lammps/ChangeLog | 5 +
67 sci-physics/lammps/Manifest | 1 +
68 ...mmps-20130930.ebuild => lammps-20131123.ebuild} | 0
69 sci-physics/mc-tester/ChangeLog | 11 +
70 sci-physics/mc-tester/Manifest | 1 +
71 .../files/mc-tester-1.25.0-compare.sh.patch | 30 ++
72 sci-physics/mc-tester/mc-tester-1.25.0.ebuild | 65 +++
73 .../mc-tester}/metadata.xml | 10 +-
74 sci-physics/tauola/ChangeLog | 12 +
75 sci-physics/tauola/Manifest | 1 +
76 .../tauola/files/tauola-1.1.3-makefile.patch | 12 +
77 .../files/tauola-1.1.3-tau-spinner-makefile.patch | 11 +
78 .../cdfplayer => sci-physics/tauola}/metadata.xml | 11 +-
79 sci-physics/tauola/tauola-1.1.3.ebuild | 69 +++
80 sci-physics/tauola/tauola-9999.ebuild | 75 +++
81 sci-visualization/yt/Manifest | 1 +
82 .../yt/{yt-9999.ebuild => yt-2.6.ebuild} | 34 +-
83 sci-visualization/yt/yt-9999.ebuild | 25 +-
84 sys-cluster/charm/ChangeLog | 13 +
85 ...harm-6.5.1-r3.ebuild => charm-6.6.0_rc1.ebuild} | 48 +-
86 ....patch => charm-6.6.0-static-library-fix.patch} | 49 +-
87 sys-cluster/hpl/ChangeLog | 16 +
88 sys-cluster/hpl/hpl-2.1.ebuild | 3 +-
89 55 files changed, 1188 insertions(+), 676 deletions(-)