[gentoo-commits] repo/gentoo:master commit in: sci-biology/bcftools/

[David Seifert]

commit:     0c0f7543e2f922af5b5198b2abb6d9c32b6be5cb
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Oct 11 14:55:09 2021 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Oct 11 14:55:09 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0c0f7543

sci-biology/bcftools: drop 1.10.2

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/bcftools/Manifest               |  1 -
 sci-biology/bcftools/bcftools-1.10.2.ebuild | 43 -----------------------------
 2 files changed, 44 deletions(-)

diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest
index 958ce72a852..bfc2b78ed04 100644
--- a/sci-biology/bcftools/Manifest
+++ b/sci-biology/bcftools/Manifest
@@ -1,2 +1 @@
-DIST bcftools-1.10.2.tar.bz2 3702679 BLAKE2B 51acce94d463868562199206504dc8afb50c671c11139c5a96f52cedf135bb7a46115c69411b9943b970a2395e3c866275c85e345a4a40a90194d1094698314e SHA512 f07e405efa16b9b1b18521342df3eaf840ed1b3028b736a6b4d139012ea85769ddfb3cd3a2c94958415d984d07805dfcd3d4bbec0db401b3f071b861a56d1300
 DIST bcftools-1.13.tar.bz2 6906796 BLAKE2B 4c02d65733d28684f9a976e082913d79dbac4463c9471fc26d8ee0cbe7ad25af429cf7d01b9771bc34309386ccd2d77ebd54fbf64ed4183d1c2ebfbc0e727afb SHA512 aa533233dd2fec2279859204be39430c4fc630137a91d57fe917fd7a220044d5202ddc3d44bcffc3bd5bd5bb64f6ea4c8ec3c31e5e1ec72399998f1e6f23a55a

diff --git a/sci-biology/bcftools/bcftools-1.10.2.ebuild b/sci-biology/bcftools/bcftools-1.10.2.ebuild
deleted file mode 100644
index a484f69133e..00000000000
--- a/sci-biology/bcftools/bcftools-1.10.2.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{8..9} )
-
-inherit python-single-r1
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org"
-SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	dev-lang/perl
-	$(python_gen_cond_dep '
-		dev-python/matplotlib[${PYTHON_USEDEP}]
-	')
-	=sci-libs/htslib-${PV}*:=
-	sys-libs/zlib:=
-	${PYTHON_DEPS}"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-	default
-
-	python_fix_shebang misc/{guess-ploidy,plot-roh}.py
-
-	# remove bundled htslib
-	rm -r htslib-* || die
-}
-
-src_configure() {
-	econf \
-		--disable-bcftools-plugins \
-		--disable-libgsl \
-		--with-htslib=system
-}