Gentoo Archives: gentoo-commits

From: Horea Christian <horea.christ@×××××.com>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/exomiser-bin/
Date: Sun, 27 Sep 2020 21:24:35
Message-Id: 1601240616.e2f2334b11f6a99c17b945ccdbcdc3f029879db1.chymera@gentoo
1 commit: e2f2334b11f6a99c17b945ccdbcdc3f029879db1
2 Author: Horea Christian <chr <AT> chymera <DOT> eu>
3 AuthorDate: Sun Sep 27 21:03:36 2020 +0000
4 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
5 CommitDate: Sun Sep 27 21:03:36 2020 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e2f2334b
7
8 sci-biology/exomiser-bin: removed unmaintained package
9
10 Package-Manager: Portage-3.0.8, Repoman-3.0.1
11 Signed-off-by: Horea Christian <chr <AT> chymera.eu>
12
13 sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild | 30 ----------------------
14 sci-biology/exomiser-bin/metadata.xml | 12 ---------
15 2 files changed, 42 deletions(-)
16
17 diff --git a/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild b/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild
18 deleted file mode 100644
19 index 87434fa8a..000000000
20 --- a/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild
21 +++ /dev/null
22 @@ -1,30 +0,0 @@
23 -# Copyright 1999-2016 Gentoo Foundation
24 -# Distributed under the terms of the GNU General Public License v2
25 -
26 -EAPI=5
27 -
28 -DESCRIPTION="Annotate VCF files and prioritize genome/exome mutations"
29 -HOMEPAGE="http://www.sanger.ac.uk/science/tools/exomiser"
30 -SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${PV}-distribution.zip
31 - ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/GenomiserREADME -> ${PN}.README
32 - ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/README.md -> ${PN}.README.md"
33 -# 1.16GB !
34 -
35 -LICENSE="AGPL-3+"
36 -SLOT="0"
37 -KEYWORDS=""
38 -IUSE=""
39 -
40 -DEPEND="sci-biology/Jannovar-bin"
41 -RDEPEND="${DEPEND}"
42 -
43 -src_install(){
44 - dodoc "${DISTDIR}"/${PN}.README "${DISTDIR}"/${PN}.README.md
45 -}
46 -
47 -pkg_postinst(){
48 - einfo "Please download 3.7GB file from ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/h2_db_dumps/exomiser-${PV}.BETA.h2.db.gz"
49 - einfo "and follow README.md"
50 - einfo "The is also 19GB file ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-7.2.1-data.zip"
51 - einfo "with test data"
52 -}
53
54 diff --git a/sci-biology/exomiser-bin/metadata.xml b/sci-biology/exomiser-bin/metadata.xml
55 deleted file mode 100644
56 index 138cb7705..000000000
57 --- a/sci-biology/exomiser-bin/metadata.xml
58 +++ /dev/null
59 @@ -1,12 +0,0 @@
60 -<?xml version="1.0" encoding="UTF-8"?>
61 -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
62 -<pkgmetadata>
63 - <maintainer type="person">
64 - <email>mmokrejs@×××××××××××××××.cz</email>
65 - <name>Martin Mokrejs</name>
66 - </maintainer>
67 - <maintainer type="project">
68 - <email>sci-biology@g.o</email>
69 - <name>Gentoo Biology Project</name>
70 - </maintainer>
71 -</pkgmetadata>