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Hi Neil, |
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|
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Sorry to getting back to you late. I have not forgotten these issues. |
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|
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Neil Shephard <nshephard@×××××.com> writes: |
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|
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> Thanks for the comprehensive reply and explanations. |
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> |
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> Whilst I've no existing contact with the R development team I will |
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> make inquiries about moving "SystemRequirements" from free text to a |
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> more machine-readable format. |
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> |
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> I'm also keen to help provide feedback on R_Overlay and help with its |
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> development where I can, to which end I have as advised re-emerged |
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> =dev-lang/R-3.4.4 with USE=minimal and tried installing packages I |
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> use. Quite a few packages still fail unfortunately, I'm emerging the |
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> following.... |
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> |
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> [...] |
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|
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> 1) Outdated ebuilds |
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> |
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> Quite a few src packages could not be retrieved... |
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> |
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> # grep '404 Not Found' /var/tmp/portage/sci-CRAN/*/temp/build.log -B3 | grep contrib |
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> /var/tmp/portage/sci-CRAN/ggHorizon-0.1/temp/build.log---2018-03-22 10:10:21-- http://cran.r-project.org/src/contrib/ggHorizon_0.1.tar.gz |
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> /var/tmp/portage/sci-CRAN/ggimage-0.0.2/temp/build.log---2018-03-22 10:10:35-- http://cran.r-project.org/src/contrib/ggimage_0.0.2.tar.gz |
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> /var/tmp/portage/sci-CRAN/igraph-1.1.2/temp/build.log---2018-03-22 10:09:30-- http://cran.r-project.org/src/contrib/igraph_1.1.2.tar.gz |
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> /var/tmp/portage/sci-CRAN/lubridate-1.7.0/temp/build.log---2018-03-26 11:15:41-- http://cran.r-project.org/src/contrib/lubridate_1.7.0.tar.gz |
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> /var/tmp/portage/sci-CRAN/Rcpp-0.12.15/temp/build.log---2018-03-22 09:11:46-- http://cran.r-project.org/src/contrib/Rcpp_0.12.15.tar.gz |
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> /var/tmp/portage/sci-CRAN/rgl-0.95.1441/temp/build.log---2018-03-26 11:23:58-- http://cran.r-project.org/src/contrib/rgl_0.95.1441.tar.gz |
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> /var/tmp/portage/sci-CRAN/xml2-0.1.2/temp/build.log---2018-03-26 11:15:01-- http://cran.r-project.org/src/contrib/xml2_0.1.2.tar.gz |
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> |
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> I suspect that this is down to the SystemRequirements issue you've |
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> highlighted exists meaning outdated ebuilds exist in R_Overlay. |
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|
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I am exposing a set of unmatched strings in the description field at |
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|
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http://roverlay.dev.gentoo.org/unresolved.html |
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|
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For example, I can see the rgl case, |
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|
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> 2018-05-27 05:06:10 INFO DependencyResolver.UNRESOLVABLE: 0x7, 'XQuartz (on OSX)' |
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> 2018-05-27 05:06:10 INFO DependencyResolver.UNRESOLVABLE: 0x7, 'zlib(optional)' |
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> 2018-05-27 05:06:10 INFO DependencyResolver.UNRESOLVABLE: 0x7, 'libpng (>=1.2.9' |
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> 2018-05-27 05:06:10 INFO DependencyResolver.UNRESOLVABLE: 0x7, 'pandoc (>=1.14' |
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> 2018-05-27 05:06:10 INFO DependencyResolver.UNRESOLVABLE: 0x7, 'needed for vignettes)' |
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> 2018-05-27 05:06:10 INFO EbuildCreation.rgl.depres: Cannot satisfy dependencies! |
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> 2018-05-27 05:06:10 INFO EbuildCreation.rgl: Cannot create an ebuild for this package (status=-2). |
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> 2018-05-27 05:06:10 DEBUG OverlayCreator.R_Overlay.sci-CRAN.rgl: removing 0.99.16 from rgl |
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|
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These are non-machine readable strings that calls for special |
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treatments. We should make a better parser for these. |
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|
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> 2) Checksums failed |
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> |
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> Three packages failed to emerge due to Checksums of the fetched src not matching |
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> |
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> # grep 'checksum' -i /var/tmp/portage/sci-CRAN/*/temp/build.log -B60 | grep contrib |
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> /var/tmp/portage/sci-CRAN/Matrix-1.2.12/temp/build.log---2018-03-26 12:34:13-- http://cran.r-project.org/src/contrib/Matrix_1.2-12.tar.gz |
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> /var/tmp/portage/sci-CRAN/mvtnorm-1.0.7/temp/build.log---2018-03-26 12:33:25-- http://cran.r-project.org/src/contrib/mvtnorm_1.0-7.tar.gz |
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> /var/tmp/portage/sci-CRAN/nloptr-1.0.4/temp/build.log---2018-03-26 |
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> 12:33:05-- http://cran.r-project.org/src/contrib/nloptr_1.0.4.tar.gz |
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|
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Hmmm, it looks like the upstream has silently replaced the tarballs. Duh. |
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|
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> 3) 'File Not Found' |
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> |
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> The majority failed after the build and installation had occurred |
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> within R and control had returned to Portage with "File Not Found" |
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> errors similar to the following... |
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|
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This has been my silly typo... Now fixed. |
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|
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Cheers, |
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Benda |