Gentoo Archives: gentoo-science

From: Mathias Weigt <m.weigt@××××××××.de>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] openbabel-2.0.2 does not build with gcc-4.3.2
Date: Wed, 13 May 2009 11:41:44
Message-Id: 4A0AB1F4.3000505@uni-bonn.de
In Reply to: [gentoo-science] openbabel-2.0.2 does not build with gcc-4.3.2 by Valmor de Almeida
1 Valmor de Almeida schrieb:
2 > Hello,
3 >
4 > Apparently openbabel does not build. Is this a header file problem?
5 >
6 > -> gcc --version
7 > gcc (Gentoo 4.3.2-r3 p1.6, pie-10.1.5) 4.3.2
8 > Copyright (C) 2008 Free Software Foundation, Inc.
9 >
10 > [snip]
11 >
12 > ../../src/data.h:113: error: 'strncpy' was not declared in this scope
13 > make[3]: *** [vector3.lo] Error 1
14 > make[3]: *** Waiting for unfinished jobs....
15 > make[3]: *** [matrix3x3.lo] Error 1
16 > make[3]: Leaving directory
17 > `/var/tmp/portage/sci-chemistry/openbabel-2.0.2/work/openbabel-2.0.2/src/math'
18 > make[2]: *** [all-recursive] Error 1
19 > make[2]: Leaving directory
20 > `/var/tmp/portage/sci-chemistry/openbabel-2.0.2/work/openbabel-2.0.2/src'
21 > make[1]: *** [all] Error 2
22 > make[1]: Leaving directory
23 > `/var/tmp/portage/sci-chemistry/openbabel-2.0.2/work/openbabel-2.0.2/src'
24 > make: *** [all-recursive] Error 1
25
26 > Thanks for any help.
27 >
28 > --
29 > Valmor
30 >
31
32 have a look at Bugzilla:
33 http://bugs.gentoo.org/show_bug.cgi?id=262081
34
35 There you can find a patch for this old version of openbabel...
36
37 --
38 Mathias Weigt
39
40 Institute of Pharmaceutical Chemistry
41 University of Bonn
42
43 An der Immenburg 4
44 53121 Bonn
45 Germany
46
47 Phone: +49/228/73-5240

Replies

Subject Author
Re: [gentoo-science] openbabel-2.0.2 does not build with gcc-4.3.2 Valmor de Almeida <val.gentoo@×××××.com>