Gentoo Archives: gentoo-science

From: Francois Bissey <fbissey@××××××××××××.nz>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
Date: Tue, 07 Jun 2011 20:07:46
Message-Id: 201106080807.11438.fbissey@slingshot.co.nz
1 > EL Tue, 7 Jun 2011 07:33:27 +1200
2 >
3 > Francois Bissey <fbissey@××××××××××××.nz> escrigué:
4 > > I note you are using numpy-1.6.0 I don't if that's linked to that but
5 > > sage will not work properly with it:
6 > > http://trac.sagemath.org/sage_trac/ticket/11334
7 > > Can you try again with numpy-1.5.1 at least.
8 >
9 > I am a bit surprised, but downgrading numpy actually worked. Thanks a
10 > lot for your help, Francois! Sage-4.7 should depend on ~numpy-1.5.1
11 > then, since it already depends on >=numpy-1.5.1.
12 >
13 > > And then what are the outputs of:
14 > > ldd /usr/lib64/python2.7/site-packages/numpy/core/_dotblas.so
15 > > ldd /usr/lib64/python2.7/site-packages/numpy/linalg/lapack_lite.so
16 >
17 > They link to lapack, blas and cblas, and they didn't change when I
18 > downgraded numpy.
19
20 I fixed the numpy dependencies in the sage tree. It is still curious that scipy
21 didn't apparently build properly when using numpy-1.6.0. Someone should
22 investigate that.
23
24 Francois

Replies

Subject Author
Re: [gentoo-science] sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv Steven Trogdon <strogdon@×××××.edu>