Gentoo Archives: gentoo-science

From: marco restelli <mrestelli@×××××.com>
To: gentoo-science@l.g.o
Subject: [gentoo-science] Error emergin gmsh-2.4.2
Date: Tue, 18 May 2010 11:58:39
Message-Id: AANLkTinlvvLu2fEqjtmPdfL9O1MY_ozPcP1NDdiW5iyG@mail.gmail.com
Hi,
   I'm trying to emerge gmsh-2.4.2, but I get the following error:

-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- broken
CMake Error at /usr/share/cmake/Modules/CMakeTestCXXCompiler.cmake:25 (MESSAGE):
  The C++ compiler "/usr/bin/x86_64-pc-linux-gnu-g++" is not able to compile
  a simple test program.

I'm using the default flags: USE="X jpeg png zlib -blas -cgns -chaco
-doc -examples -med -metis -mpi -opencascade"

Thank you for any help,
   Marco


Here is some more information:

emerge --info =sci-libs/gmsh-2.4.2
Portage 2.1.8.3 (default/linux/amd64/10.0/desktop/gnome, gcc-4.3.4,
glibc-2.10.1-r1, 2.6.27-gentoo-r8 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.27-gentoo-r8-x86_64-AMD_Turion-tm-_64_Mobile_Technology_ML-32-with-gentoo-1.12.13
Timestamp of tree: Thu, 13 May 2010 10:00:01 +0000
app-shells/bash:     4.0_p37
dev-java/java-config: 2.1.10
dev-lang/python:     2.6.4-r1
dev-python/pycrypto: 2.1.0_beta1
dev-util/cmake:      2.6.4-r3
sys-apps/baselayout: 1.12.13
sys-apps/sandbox:    1.6-r2
sys-devel/autoconf:  2.13, 2.63-r1
sys-devel/automake:  1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.18-r3
sys-devel/gcc:       4.3.4
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.30-r1
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=athlon64 -O2 -pipe -msse3"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d
/etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild
/etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d
/etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=athlon64 -O2 -pipe -msse3"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests collision-protect distlocks fixpackages news
parallel-fetch protect-owned sandbox sfperms strict unmerge-logs
unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="C"
LDFLAGS="-Wl,-O1"
LINGUAS="en_US de es it sr sr@Latn"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
--compress --force --whole-file --delete --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/layman/science
/usr/local/portage/layman/gcc-porting /usr/local/portage-my-ebuilds"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2
cairo cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr
eds emboss encode evo exif fam firefox flac fortran gdbm gdu gif gnome
gnome-keyring gpm gstreamer gtk hal howl iconv ipv6 jpeg latex lcms
ldap libnotify mad mikmod mmx mng modules mp3 mp4 mpeg mudflap
multilib nautilus ncurses nls nptl nptlonly ogg opengl openmp pam
pango pcre pdf perl png policykit ppds pppd python qt3support qt4
readline reflection sdl session spell spl sse sse2 ssl
startup-notification svg sysfs tcpd tetex tiff truetype unicode usb
vorbis x264 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451
als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370
ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3
trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty
extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul
mulaw multi null plug rate route share shm softvol"
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon
authn_dbm authn_default authn_file authz_dbm authz_default
authz_groupfile authz_host authz_owner authz_user autoindex cache dav
dav_fs dav_lock deflate dir disk_cache env expires ext_filter
file_cache filter headers include info log_config logio mem_cache mime
mime_magic negotiation rewrite setenvif speling status unique_id
userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev
keyboard synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz
cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LINGUAS="en_US de es it sr sr@Latn" RUBY_TARGETS="ruby18"
USERLAND="GNU" VIDEO_CARDS="radeon" XTABLES_ADDONS="quota2 psd pknock
lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee
tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK,
LC_ALL, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS,
PORTAGE_RSYNC_EXTRA_OPTS

cat /var/tmp/portage/sci-libs/gmsh-2.4.2/temp/build.log
 * CPV:  sci-libs/gmsh-2.4.2
 * REPO: science
 * USE:  X amd64 elibc_glibc jpeg kernel_linux multilib png userland_GNU zlib
 * Put the F77 variable in env files to select your fortran compiler
 * example for gfortran:
 * echo "F77=gfortran" >> /etc/portage/env/sci-libs/gmsh
>>> Unpacking source... >>> Unpacking gmsh-2.4.2-source.tgz to /var/tmp/portage/sci-libs/gmsh-2.4.2/work >>> Source unpacked in /var/tmp/portage/sci-libs/gmsh-2.4.2/work >>> Preparing source in /var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2 ...
* Appending a library link instruction (-ldl); libraries to link to should not be passed through LDFLAGS * Appending a library link instruction (-lmpi); libraries to link to should not be passed through LDFLAGS
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2_build"
cmake -C /var/tmp/portage/sci-libs/gmsh-2.4.2/temp/gentoo_common_config.cmake -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_BLAS_LAPACK=OFF -DENABLE_CGNS=OFF -DENABLE_CHACO=OFF -DENABLE_FLTK=ON -DENABLE_FL_TREE=ON -DENABLE_GRAPHICS=ON -DENABLE_MED=OFF -DENABLE_METIS=OFF -DENABLE_OCC=OFF -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/gmsh-2.4.2/temp/gentoo_rules.cmake /var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2 loading initial cache file /var/tmp/portage/sci-libs/gmsh-2.4.2/temp/gentoo_common_config.cmake -- The CXX compiler identification is GNU -- The C compiler identification is GNU -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- broken CMake Error at /usr/share/cmake/Modules/CMakeTestCXXCompiler.cmake:25 (MESSAGE): The C++ compiler "/usr/bin/x86_64-pc-linux-gnu-g++" is not able to compile a simple test program. It fails with the following output: Change Dir: /var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2_build/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/cmTryCompileExec.dir/build gmake[1]: Entering directory `/var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2_build/CMakeFiles/CMakeTmp' /usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2_build/CMakeFiles/CMakeTmp/CMakeFiles 1 Building CXX object CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o /usr/bin/c++ -march=athlon64 -O2 -pipe -msse3 -o CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o -c /var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2_build/CMakeFiles/CMakeTmp/testCXXCompiler.cxx Linking CXX executable cmTryCompileExec /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/c++ -march=athlon64 -O2 -pipe -msse3 -fPIC -Wl,-O1 -ldl -lmpi CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o -o cmTryCompileExec -rdynamic /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lmpi collect2: ld returned 1 exit status gmake[1]: Leaving directory `/var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2_build/CMakeFiles/CMakeTmp' gmake[1]: *** [cmTryCompileExec] Error 1 gmake: *** [cmTryCompileExec/fast] Error 2 CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:17 (project) -- Configuring incomplete, errors occurred! * ERROR: sci-libs/gmsh-2.4.2 failed: * cmake failed * * Call stack: * ebuild.sh, line 54: Called src_configure * environment, line 3043: Called cmake-utils_src_configure '-DENABLE_BLAS_LAPACK=OFF' '-DENABLE_CGNS=OFF' '-DENABLE_CHACO=OFF' '-DENABLE_FLTK=ON' '-DENABLE_FL_TREE=ON' '-DENABLE_GRAPHICS=ON' '-DENABLE_MED=OFF' '-DENABLE_METIS=OFF' '-DENABLE_OCC=OFF' * environment, line 778: Called _execute_optionaly 'src_configure' '-DENABLE_BLAS_LAPACK=OFF' '-DENABLE_CGNS=OFF' '-DENABLE_CHACO=OFF' '-DENABLE_FLTK=ON' '-DENABLE_FL_TREE=ON' '-DENABLE_GRAPHICS=ON' '-DENABLE_MED=OFF' '-DENABLE_METIS=OFF' '-DENABLE_OCC=OFF' * environment, line 243: Called enable_cmake-utils_src_configure '-DENABLE_BLAS_LAPACK=OFF' '-DENABLE_CGNS=OFF' '-DENABLE_CHACO=OFF' '-DENABLE_FLTK=ON' '-DENABLE_FL_TREE=ON' '-DENABLE_GRAPHICS=ON' '-DENABLE_MED=OFF' '-DENABLE_METIS=OFF' '-DENABLE_OCC=OFF' * environment, line 1191: Called die * The specific snippet of code: * cmake "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; * * If you need support, post the output of 'emerge --info =sci-libs/gmsh-2.4.2', * the complete build log and the output of 'emerge -pqv =sci-libs/gmsh-2.4.2'. * This ebuild is from an overlay named 'science': '/usr/local/portage/layman/science/' * The complete build log is located at '/var/tmp/portage/sci-libs/gmsh-2.4.2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/gmsh-2.4.2/temp/environment'. * S: '/var/tmp/portage/sci-libs/gmsh-2.4.2/work/gmsh-2.4.2'

Replies

Subject Author
Re: [gentoo-science] Error emergin gmsh-2.4.2 Marcin <mrybarski@×××××.com>