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Quoting Steven Trogdon <strogdon@×××××.edu>: |
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|
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> On Wed, 24 Aug 2011 12:03:19 +0200 |
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> rose@××××××××××××××.de wrote: |
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> |
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>> Hi, |
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>> |
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>> I just installed more or less succesful sage. During the installation |
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>> numpy was downgraded from numpy-1.6.1 to numpy-1.5.1. |
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>> Now every 'emerge -uvDN world' complaines about; |
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>> |
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>> WARNING: One or more updates have been skipped due to a dependency conflict: |
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>> |
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>> dev-python/numpy:0 |
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>> |
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>> (dev-python/numpy-1.6.1::gentoo, ebuild scheduled for merge) |
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>> conflicts with |
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>> ~dev-python/numpy-1.5.1 required by |
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>> (sci-mathematics/sage-4.7.1::sage-on-gentoo, installed) |
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>> |
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>> dev-python/pexpect:0 |
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>> |
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>> (dev-python/pexpect-2.4-r1::sage-on-gentoo, ebuild scheduled for |
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>> merge) conflicts with |
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>> ~dev-python/pexpect-2.0 required by |
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>> (sci-mathematics/sage-4.7.1::sage-on-gentoo, installed) |
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>> |
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>> If I try to install couchdb, numpy-1.6.1 will be installed again: |
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>> |
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>> root@caiman:/root(4)# emerge -pvuDN couchdb |
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>> |
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>> These are the packages that would be merged, in order: |
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>> |
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>> Calculating dependencies... done! |
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>> [ebuild N ] dev-lang/erlang-14.2.3 USE="doc emacs java odbc smp |
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>> ssl tk wxwidgets -halfword -hipe -kpoll -sctp" 98,075 kB |
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>> [ebuild N ] dev-db/couchdb-1.1.0 USE="-test" 1,063 kB |
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>> [ebuild U ] dev-python/numpy-1.6.1 [1.5.1] USE="doc lapack -test" 0 kB |
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>> |
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>> Should I mask numpy-1.6.1 or how are the chances that sage will work |
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>> with numpy-1.6.1? |
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>> |
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> At least until this Bug |
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> |
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> https://bugs.gentoo.org/show_bug.cgi?id=371099 |
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> |
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> is resolved (sog) sage requires ~numpy-1.5.1 |
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> |
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> I'm not sure exactly the impact on your system of masking |
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> >=numpy-1.6.0 but you |
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> could try that and see what emerge -puDNv world gives. I don't see which |
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> component, if any, of couchdb is pulling in numpy or where else numpy is |
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> needed on your system. Oh, and you will also have to mask >=pexpect-2.4 |
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> |
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> Steve |
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> |
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|
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Thanks Steve, |
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|
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OK, I masked: |
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|
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> =dev-python/numpy-1.6.0 |
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> =dev-python/pexpect-2.4 |
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|
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The following installation of couchdb was no problem, also 'emerge |
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-puvDN world' did not complain about any conflicts. But I made the |
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mistake to delete scipy. Now 'emerge scipy' fails with: |
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... |
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RefactoringTool: |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/sparse/linalg/isolve/setup.py |
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RefactoringTool: |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/setup.py |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/io/__init__.py |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/io/matlab/mio4.py |
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... |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/ode.py |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/quadpack.py |
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blas_opt_info: |
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blas_mkl_info: |
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libraries mkl,vml,guide not found in /usr/local/lib64 |
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libraries mkl,vml,guide not found in /usr/local/lib |
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libraries mkl,vml,guide not found in /usr/lib64 |
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libraries mkl,vml,guide not found in /usr/lib |
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NOT AVAILABLE |
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|
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atlas_blas_threads_info: |
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Setting PTATLAS=ATLAS |
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Warning: No configuration returned, assuming |
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unavailable./usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:527: UserWarning: Specified path is |
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invalid. |
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warnings.warn('Specified path %s is invalid.' % d) |
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libraries atlcblas,f77blas,m,atlas not found in /usr/lib64 |
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NOT AVAILABLE |
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... |
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blas_src_info: |
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NOT AVAILABLE |
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|
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/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:1411: |
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UserWarning: |
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Blas (http://www.netlib.org/blas/) sources not found. |
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Directories to search for the sources can be specified in the |
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numpy/distutils/site.cfg file (section [blas_src]) or by setting |
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the BLAS_SRC environment variable. |
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warnings.warn(BlasSrcNotFoundError.__doc__) |
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Traceback (most recent call last): |
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File "setup.py", line 181, in <module> |
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... |
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File |
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"/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py", |
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line 461, in get_info |
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raise self.notfounderror(self.notfounderror.__doc__) |
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numpy.distutils.system_info.BlasNotFoundError: |
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Blas (http://www.netlib.org/blas/) libraries not found. |
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Directories to search for the libraries can be specified in the |
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numpy/distutils/site.cfg file (section [blas]) or by setting |
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the BLAS environment variable. |
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* ERROR: sci-libs/scipy-0.9.0-r1 failed (compile phase): |
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* Building failed with CPython 3.2 in distutils_building() function |
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|
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|
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USE_PYTHON="2.7" 'emerge -v1 scipy' |