[gentoo-science] Failed emerge for sci-libs/trilinos-12.2.1

[marco restelli]

Dear all,
   I am having problems emerging sci-libs/trilinos-12.2.1.

The build fails during configuration with

Processing enabled TPL: BinUtils (enabled explicitly, disable with
-DTPL_ENABLE_BinUtils=OFF)
-- Must find at least one lib in each of the lib sets "bfd;iberty"
-- Searching for libs in BinUtils_LIBRARY_DIRS=''
-- Searching for a lib in the set "bfd":
--   Searching for lib 'bfd' ...
-- ERROR: Did not find a lib in the lib set "bfd" for the TPL 'BinUtils'!
-- Searching for a lib in the set "iberty":
--   Searching for lib 'iberty' ...
-- ERROR: Did not find a lib in the lib set "iberty" for the TPL 'BinUtils'!
-- ERROR: Could not find the libraries for the TPL 'BinUtils'!
-- TIP: If the TPL 'BinUtils' is on your system then you can set:
     -DBinUtils_LIBRARY_DIRS='<dir0>;<dir1>;...'
   to point to the directories where these libraries may be found.
   Or, just set:
     -DTPL_BinUtils_LIBRARIES='<path-to-libs0>;<path-to-libs1>;...'
   to point to the full paths for the libraries which will
   bypass any search for libraries and these libraries will be used without
   question in the build.  (But this will result in a build-time error
   if not all of the necessary symbols are found.)
-- ERROR: Failed finding all of the parts of TPL 'BinUtils' (see
above), Aborting!


Thank you,
   Marco


Here are more details (I can provide the complete build log if
required):


$ emerge --info =sci-libs/trilinos-12.2.1::science
Portage 2.2.26 (python 3.4.3-final-0,
default/linux/amd64/13.0/desktop, gcc-4.9.3, glibc-2.21-r2,
3.12.13-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.12.13-gentoo-x86_64-Intel-R-_Core-TM-_i3-2120_CPU_@_3.30GHz-with-gentoo-2.2
KiB Mem:     3926120 total,     47012 free
KiB Swap:   15999996 total,   8557632 free
Timestamp of repository gentoo: Fri, 01 Apr 2016 14:00:01 +0000
sh bash 4.3_p42-r1
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p42-r1::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.4.3-r1::gentoo
dev-util/cmake:           3.3.1-r1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.19.1::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.12.6::gentoo,
1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.21-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 0

sage-on-gentoo
    location: /var/lib/layman/sage-on-gentoo
    masters: gentoo science
    priority: 1

myebuild
    location: /var/lib/myebuild
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc
/usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d
/etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release
/etc/revdep-rebuild /etc/sandbox.d /etc/terminfo
/etc/texmf/language.dat.d /etc/texmf/language.def.d
/etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified
distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch
preserve-libs protect-owned sandbox sfperms splitdebug strict
unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv
usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="de_DE.utf8"
LC_ALL="de_DE.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
--omit-dir-times --compress --force --whole-file --delete --stats
--human-readable --timeout=180 --exclude=/distfiles --exclude=/local
--exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi afs alsa amd64 berkdb bluetooth branding bzip2
cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus djvu dri
dts dvd dvdr dvi emboss encode exif fam firefox flac fortran
fortran2003 gdbm gif glamor gpm gtk iconv icu ipv6 jpeg kerberos latex
lcms ldap libnotify lua luatex mad mate mmx mmxext mng modules mp3 mp4
mpeg multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf
png policykit ppds qt3support qt4 readline sdl seccomp session spell
sse sse2 ssl startup-notification svg tcpd tetex tiff truetype udev
udisks unicode upower usb vim vim-syntax vorbis wxwidgets x264 xattr
xcb xml xv xvid zlib" ABI_X86="32 64" ALSA_CARDS="ali5451 als4000
atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371
es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident
usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core
authz_core socache_shmcb unixd actions alias auth_basic authn_alias
authn_anon authn_dbm authn_default authn_file authz_dbm authz_default
authz_groupfile authz_host authz_owner authz_user autoindex cache cgi
cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter
file_cache filter headers include info log_config logio mem_cache mime
mime_magic negotiation rewrite setenvif speling status unique_id
userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan
sheets stage tables krita karbon braindump author" CAMERAS="ptp2"
COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
CPU_FLAGS_X86="avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2
ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore
fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom
oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing
tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb
ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console
presenter-minimizer" LINGUAS="en en_US ar de eo es es_ES it af br da
cy fy he is nds nl oc yi el hr sr" OFFICE_IMPLEMENTATION="libreoffice"
PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7"
PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21"
USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock
lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee
tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK,
PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS,
PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON