Gentoo Archives: gentoo-science

From: "M. J. Everitt" <m.j.everitt@×××.org>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] Failed emerge for sci-visualization/mayavi-4.4.2
Date: Thu, 26 May 2016 02:24:26
Message-Id: 57465E55.7050701@iee.org
In Reply to: [gentoo-science] Failed emerge for sci-visualization/mayavi-4.4.2 by marco restelli
1 On 20/05/16 14:34, marco restelli wrote:
2 > Hi,
3 > I have a problem emerging sci-visualization/mayavi-4.4.2: here is
4 > the error message:
5 >
6 >>>> Compiling source in /var/tmp/portage/sci-visualization/mayavi-4.4.2/work/mayavi-4.4.2 ...
7 > * python2_7: running distutils-r1_run_phase distutils-r1_python_compile
8 > /usr/bin/python2.7 setup.py build
9 > running build
10 > ----------------------------------------------------------------------
11 > Building TVTK classes.../var/tmp/portage/sci-visualization/mayavi-4.4.2/temp/environment:
12 > line 1434: 13669 Segmentation fault "${@}"
13 > * ERROR: sci-visualization/mayavi-4.4.2::science failed (compile phase):
14 > * (no error message)
15 > *
16 > * Call stack:
17 > * ebuild.sh, line 133: Called src_compile
18 > * environment, line 3657: Called distutils-r1_src_compile
19 > * environment, line 949: Called _distutils-r1_run_foreach_impl
20 > 'distutils-r1_python_compile'
21 > * environment, line 370: Called python_foreach_impl
22 > 'distutils-r1_run_phase' 'distutils-r1_python_compile'
23 > * environment, line 3189: Called multibuild_foreach_variant
24 > '_python_multibuild_wrapper' 'distutils-r1_run_phase'
25 > 'distutils-r1_python_compile'
26 > * environment, line 2291: Called _multibuild_run
27 > '_python_multibuild_wrapper' 'distutils-r1_run_phase'
28 > 'distutils-r1_python_compile'
29 > * environment, line 2289: Called _python_multibuild_wrapper
30 > 'distutils-r1_run_phase' 'distutils-r1_python_compile'
31 > * environment, line 632: Called distutils-r1_run_phase
32 > 'distutils-r1_python_compile'
33 > * environment, line 940: Called distutils-r1_python_compile
34 > * environment, line 812: Called esetup.py 'build'
35 > * environment, line 1440: Called die
36 > * The specific snippet of code:
37 > * "${@}" || die "${die_args[@]}" || return ${?}
38 >
39 >
40 > I could open a bug, but first I would like to understand whether the
41 > problem is with the mayavi ebuild, or mayavi itself, or some
42 > dependency.
43 >
44 > Thank you,
45 > Marco
46 >
47 >
48 > Here are some more details:
49 >
50 > # emerge --info '=sci-visualization/mayavi-4.4.2::science'
51 > /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en)
52 > setlocale: unsupported locale setting
53 > setlocale: unsupported locale setting
54 > Portage 2.2.28 (python 3.4.3-final-0,
55 > default/linux/amd64/13.0/desktop, gcc-4.9.3, glibc-2.22-r4,
56 > 3.12.13-gentoo x86_64)
57 > =================================================================
58 > System Settings
59 > =================================================================
60 > System uname: Linux-3.12.13-gentoo-x86_64-Intel-R-_Core-TM-_i3-2120_CPU_@_3.30GHz-with-gentoo-2.2
61 > KiB Mem: 3926120 total, 739384 free
62 > KiB Swap: 15999996 total, 15128780 free
63 > Timestamp of repository gentoo: Fri, 20 May 2016 13:00:01 +0000
64 > sh bash 4.3_p42-r1
65 > ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
66 > app-shells/bash: 4.3_p42-r1::gentoo
67 > dev-java/java-config: 2.2.0-r3::gentoo
68 > dev-lang/perl: 5.20.2::gentoo
69 > dev-lang/python: 2.7.10-r1::gentoo, 3.4.3-r1::gentoo
70 > dev-util/cmake: 3.3.1-r1::gentoo
71 > dev-util/pkgconfig: 0.28-r2::gentoo
72 > sys-apps/baselayout: 2.2::gentoo
73 > sys-apps/openrc: 0.19.1::gentoo
74 > sys-apps/sandbox: 2.10-r1::gentoo
75 > sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo
76 > sys-devel/automake: 1.11.6-r1::gentoo, 1.12.6::gentoo,
77 > 1.14.1::gentoo, 1.15::gentoo
78 > sys-devel/binutils: 2.25.1-r1::gentoo
79 > sys-devel/gcc: 4.9.3::gentoo
80 > sys-devel/gcc-config: 1.7.3::gentoo
81 > sys-devel/libtool: 2.4.6::gentoo
82 > sys-devel/make: 4.1-r1::gentoo
83 > sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
84 > sys-libs/glibc: 2.22-r4::gentoo
85 > Repositories:
86 >
87 > gentoo
88 > location: /usr/portage
89 > sync-type: rsync
90 > sync-uri: rsync://rsync.gentoo.org/gentoo-portage
91 > priority: -1000
92 >
93 > science
94 > location: /var/lib/layman/science
95 > masters: gentoo
96 > priority: 0
97 >
98 > sage-on-gentoo
99 > location: /var/lib/layman/sage-on-gentoo
100 > masters: gentoo science
101 > priority: 1
102 >
103 > myebuild
104 > location: /var/lib/myebuild
105 > masters: gentoo
106 > priority: 2
107 >
108 > ACCEPT_KEYWORDS="amd64"
109 > ACCEPT_LICENSE="* -@EULA"
110 > CBUILD="x86_64-pc-linux-gnu"
111 > CFLAGS="-march=native -O2 -pipe"
112 > CHOST="x86_64-pc-linux-gnu"
113 > CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc
114 > /usr/share/config /usr/share/gnupg/qualified.txt"
115 > CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d
116 > /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release
117 > /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo
118 > /etc/texmf/language.dat.d /etc/texmf/language.def.d
119 > /etc/texmf/updmap.d /etc/texmf/web2c"
120 > CXXFLAGS="-march=native -O2 -pipe"
121 > DISTDIR="/usr/portage/distfiles"
122 > FCFLAGS="-O2 -pipe"
123 > FEATURES="assume-digests binpkg-logs config-protect-if-modified
124 > distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch
125 > preserve-libs protect-owned sandbox sfperms splitdebug strict
126 > unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv
127 > usersandbox usersync xattr"
128 > FFLAGS="-O2 -pipe"
129 > GENTOO_MIRRORS="http://distfiles.gentoo.org"
130 > LANG="en"
131 > LC_ALL="en"
132 > LDFLAGS="-Wl,-O1 -Wl,--as-needed"
133 > MAKEOPTS="-j1"
134 > PKGDIR="/usr/portage/packages"
135 > PORTAGE_CONFIGROOT="/"
136 > PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
137 > --omit-dir-times --compress --force --whole-file --delete --stats
138 > --human-readable --timeout=180 --exclude=/distfiles --exclude=/local
139 > --exclude=/packages --exclude=/.git"
140 > PORTAGE_TMPDIR="/var/tmp"
141 > USE="X a52 aac acl acpi afs alsa amd64 berkdb bluetooth branding bzip2
142 > cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus djvu dri
143 > dts dvd dvdr dvi emboss encode exif fam firefox flac fortran
144 > fortran2003 gdbm gif glamor gpm gtk iconv icu ipv6 jpeg kerberos latex
145 > lcms ldap libnotify lua luatex mad mate mmx mmxext mng modules mp3 mp4
146 > mpeg multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf
147 > png policykit ppds qt3support qt4 readline sdl seccomp session spell
148 > sse sse2 ssl startup-notification svg tcpd tetex tiff truetype udev
149 > udisks unicode upower usb vim vim-syntax vorbis wxwidgets x264 xattr
150 > xcb xml xv xvid zlib" ABI_X86="32 64" ALSA_CARDS="ali5451 als4000
151 > atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371
152 > es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident
153 > usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core
154 > authz_core socache_shmcb unixd actions alias auth_basic authn_alias
155 > authn_anon authn_dbm authn_default authn_file authz_dbm authz_default
156 > authz_groupfile authz_host authz_owner authz_user autoindex cache cgi
157 > cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter
158 > file_cache filter headers include info log_config logio mem_cache mime
159 > mime_magic negotiation rewrite setenvif speling status unique_id
160 > userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan
161 > sheets stage tables krita karbon braindump author" CAMERAS="ptp2"
162 > COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
163 > CPU_FLAGS_X86="avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2
164 > ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore
165 > fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom
166 > oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing
167 > tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux"
168 > LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb
169 > ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console
170 > presenter-minimizer" LINGUAS="en en_US ar de eo es es_ES it af br da
171 > cy fy he is nds nl oc yi el hr sr" OFFICE_IMPLEMENTATION="libreoffice"
172 > PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7"
173 > PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21"
174 > USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock
175 > lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee
176 > tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
177 > Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK,
178 > PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS,
179 > PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
180 >
181 Segmentation fault .. nice....

Replies

Subject Author
Re: [gentoo-science] Failed emerge for sci-visualization/mayavi-4.4.2 marco restelli <mrestelli@×××××.com>