Gentoo Archives: gentoo-science

From: P Purkayastha <ppurka@×××××.com>
To: gentoo-science <gentoo-science@l.g.o>
Subject: [gentoo-science] [sage-on-gentoo] sci-chemistry/jmol{,-applet}, sci-mathematics/sage-doc fails to compile
Date: Sat, 20 Aug 2011 13:23:40
1 Hi,
2 I was updating world today and the following packages failed:
4 1. sci-chemistry/jmol-applet-12.0.45-r1 and sci-chemistry/jmol-12.0.45
5 failed to compile.The errors are almost the same for both the packages.
7 2. sci-mathematics/sage-doc-4.7.1 failed with a digest failure.
10 The build logs are attached with this email.
12 My emerge --info is given below. Please let me know if you need any further
13 information.
15 Portage 2.2.0_alpha51 (default/linux/amd64/10.0/desktop/kde, gcc-4.4.5,
16 glibc-2.12.2-r0, 2.6.38-gentoo-r6 x86_64)
17 =================================================================
18 System uname: Linux-2.6.38-gentoo-r6-x86_64-Intel-R-_Core-TM-_i5_CPU_M_460_@
19 _2.53GHz-with-gentoo-2.0.3
20 Timestamp of tree: Sat, 20 Aug 2011 11:30:02 +0000
21 app-shells/bash: 4.1_p9
22 dev-java/java-config: 2.1.11-r3
23 dev-lang/python: 2.7.1-r1::sage-on-gentoo, 3.1.3-r1
24 dev-util/cmake: 2.8.4-r1
25 dev-util/pkgconfig: 0.26
26 sys-apps/baselayout: 2.0.3
27 sys-apps/openrc: 0.8.3-r1
28 sys-apps/sandbox: 2.4
29 sys-devel/autoconf: 2.13, 2.68
30 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1
31 sys-devel/binutils: 2.20.1-r1
32 sys-devel/gcc: 4.4.5
33 sys-devel/gcc-config: 1.4.1-r1
34 sys-devel/libtool: 2.4-r1
35 sys-devel/make: 3.82
36 sys-kernel/linux-headers: 2.6.38 (virtual/os-headers)
37 sys-libs/glibc: 2.12.2
38 Repositories: gentoo enlightenment sage-on-gentoo myself
39 Installed sets:
42 CBUILD="x86_64-pc-linux-gnu"
43 CFLAGS="-march=native -O2 -pipe"
44 CHOST="x86_64-pc-linux-gnu"
45 CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt
46 /usr/share/xsessions"
47 CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/
48 /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild
49 /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d
50 /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
51 CXXFLAGS="-march=native -O2 -pipe"
52 DISTDIR="/usr/portage/distfiles"
53 EMERGE_DEFAULT_OPTS="--with-bdeps=y"
54 FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles
55 fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms
56 strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
57 FFLAGS=""
59 LANG="en_US.UTF8"
60 LC_ALL="en_US.UTF-8"
61 LDFLAGS="-Wl,-O1 -Wl,--as-needed"
62 LINGUAS="en en_US"
63 MAKEOPTS="-j2"
64 PKGDIR="/usr/portage/packages"
66 PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
67 --compress --force --whole-file --delete --stats --timeout=180
68 --exclude=/distfiles --exclude=/local --exclude=/packages"
69 PORTAGE_TMPDIR="/var/tmp"
70 PORTDIR="/usr/portage"
71 PORTDIR_OVERLAY="/var/lib/layman/enlightenment
72 /var/lib/layman/sage-on-gentoo /usr/local/portage"
73 SYNC="rsync://"
74 USE="X a52 aac accessibility acl acpi akonadi alsa amd64 bash-completion
75 berkdb branding bzip2 cairo cdda cddb cdr cli consolekit cracklib crypt cups
76 curl curlwrappers cxx dbus declarative djvu dri dts dvd dvdr encode exif fam
77 fbcon ffmpeg flac fontconfig ftp fuse gdbm gdu gif gnutls gphoto2 gpm
78 gstreamer gtk iconv ieee1394 imagemagick jpeg kipi lame latex lcms ldap
79 libsamplerate lzma mad mmap mmx mmx2 mng modules mp3 mp4 mpeg mudflap
80 multilib musepack ncurses networkmanager nls nptl nptlonly ogg opengl openmp
81 oss pam pango pch pcmcia pcre pdf perl phonon plasma png policykit ppds pppd
82 python qt3support qt4 readline savedconfig sdl session smp speex spell
83 sqlite srt sse sse2 ssl ssse3 svg sysfs system-sqlite taglib tcpd theora
84 threads tiff truetype udev unicode usb v4l v4l2 vdpau vim-syntax vorbis wicd
85 wifi wmf x264 xattr xcf xcomposite xft xinerama xml xorg xosd xpm xulrunner
86 xv xvid xvmc yv12 zeroconf zlib zsh-completion" ALSA_CARDS="hda-intel"
87 ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file
88 hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null
89 plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic
90 authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm
91 authz_default authz_groupfile authz_host authz_owner authz_user autoindex
92 cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires
93 ext_filter file_cache filter headers include info log_config logio mem_cache
94 mime mime_magic negotiation rewrite setenvif speling status unique_id
95 userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage
96 tables krita karbon braindump active" CAMERAS="*" COLLECTD_PLUGINS="df
97 interface irq load memory rrdtool swap syslog" ELIBC="glibc"
98 GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt
99 gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore
100 rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx"
101 INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux"
102 LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb
103 ncurses text" LINGUAS="en en_US" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18"
104 USERLAND="GNU" VIDEO_CARDS="nvidia vesa" XTABLES_ADDONS="quota2 psd pknock
105 lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit
106 sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"


File name MIME type
build-jmol-applet.log.txt text/plain
build-jmol.log.txt text/plain
build-sage-doc.log.txt text/plain


Subject Author
Re: [gentoo-science] [sage-on-gentoo] sci-chemistry/jmol{,-applet}, sci-mathematics/sage-doc fails to compile Christopher Schwan <cschwan@××××××××××××××××××.de>