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upstream scipy PR for 0.17: |
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https://github.com/scipy/scipy/pull/5518 |
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|
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On 12/01/15 13:56, François Bissey wrote: |
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> So lapack 3.6.0 landed while I wasn't looking. |
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> scipy (0.16.1) doesn't like it: |
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> ldd -r /usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so |
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> linux-vdso.so.1 (0x00007fff84da2000) |
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> libopenblas_threads.so.0 => /usr/lib64/libopenblas_threads.so.0 |
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> (0x00007f5ac2513000) |
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> libreflapack.so.3 => /usr/lib64/libreflapack.so.3 |
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> (0x00007f5ac1d4d000) |
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> libpython2.7.so.1.0 => /usr/lib64/libpython2.7.so.1.0 |
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> (0x00007f5ac198e000) |
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> libc.so.6 => /lib64/libc.so.6 (0x00007f5ac15f3000) |
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> libm.so.6 => /lib64/libm.so.6 (0x00007f5ac12ee000) |
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> libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f5ac10d2000) |
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> libgfortran.so.3 => |
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> /usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/libgfortran.so.3 |
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> (0x00007f5ac0daa000) |
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> libgcc_s.so.1 => |
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> /usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/libgcc_s.so.1 (0x00007f5ac0b92000) |
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> libdl.so.2 => /lib64/libdl.so.2 (0x00007f5ac098e000) |
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> libutil.so.1 => /lib64/libutil.so.1 (0x00007f5ac078b000) |
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> /lib64/ld-linux-x86-64.so.2 (0x00007f5ac2da9000) |
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> libquadmath.so.0 => |
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> /usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/libquadmath.so.0 |
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> (0x00007f5ac054c000) |
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> undefined symbol: sgegv_ |
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> (/usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so) |
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> undefined symbol: dgegv_ |
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> (/usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so) |
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> undefined symbol: cgegv_ |
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> (/usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so) |
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> undefined symbol: zgegv_ |
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> (/usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so) |
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> |
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> There may be other. Those functions have been deprecated for a while |
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> apparently and now they have been removed. |
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> My first thought was it should mean a soname change for lapack but |
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> I am not sure how long it's been deprecated. I haven't found an upstream |
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> bug in scipy yet, but we will need a patch quickly unless lapack is masked. |
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> |
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> Francois |
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> |
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