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Hi, |
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|
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I installed in the last days sage-4.7.1 with the ebuild from |
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sage-on-gentoo overlay on four systems (all x86_64 AMD and INTEL). |
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After the installation I run the testsuite: |
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|
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cd $(mktemp -d) && sage -testall , |
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|
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which reported that between 200 and 250 tests failed. The resulting |
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log files (/home/rose/.sage/tmp/test.log) are between 1.5 and 3.3 |
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MByte. One of these shorter log files is attached. |
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|
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I got the message that one reason for the downgrade to numpy-1.5.1 is |
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bug 371099, i.e. missing clapack_* symbols in scipy-0.9.0, if |
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numpy-1.6.x is used. |
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|
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My scipy-0.9.0-r1 was installed with numpy-1.6.1. I tried already to |
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reinstall scipy-0.9.0-r1 (now with numpy-1.5.1), but it fails with: |
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|
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... |
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RefactoringTool: |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/setup.py |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/io/__init__.py |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/io/matlab/mio4.py |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/io/matlab/mio5.py |
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... |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/ode.py |
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/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/quadpack.py |
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blas_opt_info: |
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blas_mkl_info: |
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libraries mkl,vml,guide not found in /usr/local/lib64 |
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libraries mkl,vml,guide not found in /usr/local/lib |
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libraries mkl,vml,guide not found in /usr/lib64 |
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libraries mkl,vml,guide not found in /usr/lib |
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NOT AVAILABLE |
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|
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atlas_blas_threads_info: |
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Setting PTATLAS=ATLAS |
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Warning: No configuration returned, assuming |
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unavailable./usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:527: UserWarning: Specified path is |
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invalid. |
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warnings.warn('Specified path %s is invalid.' % d) |
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libraries atlcblas,f77blas,m,atlas not found in /usr/lib64 |
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NOT AVAILABLE |
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|
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atlas_blas_info: |
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libraries atlcblas,f77blas,m,atlas not found in /usr/lib64 |
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NOT AVAILABLE |
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|
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/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:1399: |
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UserWarning: |
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Atlas (http://math-atlas.sourceforge.net/) libraries not found. |
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Directories to search for the libraries can be specified in the |
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numpy/distutils/site.cfg file (section [atlas]) or by setting |
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the ATLAS environment variable. |
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warnings.warn(AtlasNotFoundError.__doc__) |
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blas_info: |
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libraries blas not found in /usr/local/lib64 |
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libraries blas not found in /usr/local/lib |
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libraries blas not found in /usr/lib64 |
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libraries blas not found in /usr/lib |
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NOT AVAILABLE |
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|
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/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:1408: |
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UserWarning: |
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Blas (http://www.netlib.org/blas/) libraries not found. |
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Directories to search for the libraries can be specified in the |
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numpy/distutils/site.cfg file (section [blas]) or by setting |
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the BLAS environment variable. |
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warnings.warn(BlasNotFoundError.__doc__) |
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blas_src_info: |
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NOT AVAILABLE |
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|
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/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:1411: |
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UserWarning: |
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Blas (http://www.netlib.org/blas/) sources not found. |
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Directories to search for the sources can be specified in the |
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numpy/distutils/site.cfg file (section [blas_src]) or by setting |
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the BLAS_SRC environment variable. |
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warnings.warn(BlasSrcNotFoundError.__doc__) |
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Traceback (most recent call last): |
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File "setup.py", line 181, in <module> |
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setup_package() |
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File "setup.py", line 173, in setup_package |
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configuration=configuration ) |
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File "/usr/lib64/python3.2/site-packages/numpy/distutils/core.py", |
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line 152, in setup |
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config = configuration() |
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... |
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File |
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"/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py", |
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line 461, in get_info |
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raise self.notfounderror(self.notfounderror.__doc__) |
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numpy.distutils.system_info.BlasNotFoundError: |
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Blas (http://www.netlib.org/blas/) libraries not found. |
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Directories to search for the libraries can be specified in the |
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numpy/distutils/site.cfg file (section [blas]) or by setting |
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the BLAS environment variable. |
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* ERROR: sci-libs/scipy-0.9.0-r1 failed (compile phase): |
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* Building failed with CPython 3.2 in distutils_building() function |
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|
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|
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Any hint? |
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