Gentoo Archives: gentoo-science

From: v_2e@×××.net
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] [sage-on-gentoo] Sage-4.5.2 build problem and a "run-time" errors.
Date: Wed, 11 Aug 2010 12:55:05
Message-Id: 20100811155523.575f47fb.v_2e@ukr.net
In Reply to: Re: [gentoo-science] [sage-on-gentoo] Sage-4.5.2 build problem and a "run-time" errors. by Christopher Schwan
1 Hello!
2
3 On Wed, 11 Aug 2010 09:46:07 +0200
4 Christopher Schwan <cschwan@××××××××××××××××××.de> wrote:
5 >
6 > That blocker means that you should remove sage-4.5.1 (its blocking 4.5.1, not
7 > 4.5.2!) first and then perform the upgrade - thats because I have put the
8 > .desktop file from sage into sage-baselayout. Without this blocker there would
9 > be file collisions.
10 >
11 I tried to remove sage-4.5.1 first of all, but it didn't help.
12 sage-baselayout-4.5.2 was still blocking sage-4.5.2
13 So I had to remove the "DEPEND="!!<sci-mathematics/sage-4.5.2"" line
14 from /var/lib/layman/sage-on-gentoo/sci-mathematics/sage-baselayout/sage-baselayout-4.5.2.ebuild
15 file, as I mentioned before.
16
17 >
18 > The symbol dgetri_ is from lapack which should be removed from linbox; merge
19 > linbox again (make sure its -r3) and try to start Sage. Please report back if
20 > it works or not!
21 I have just reemerged sci-libs/linbox-1.1.6-r3, but it didn't help. I
22 still get the following error message:
23
24 ########## Qoute begins ##########
25 ImportError Traceback (most recent call
26 last)
27
28 /usr/lib64/python2.6/site-packages/IPython/ipmaker.pyc in force_import
29 (modname, force_reload) 61 reload(sys.modules[modname])
30 62 else:
31 ---> 63 __import__(modname)
32 64
33 65
34
35 /usr/bin/ipy_profile_sage.py in <module>()
36 5 preparser(True)
37 6
38 ----> 7 import sage.all_cmdline
39 8 sage.all_cmdline._init_cmdline(globals())
40 9
41
42 /usr/lib64/python2.6/site-packages/sage/all_cmdline.py in <module>()
43 12 try:
44 13
45 ---> 14 from sage.all import *
46 15 from sage.calculus.predefined import x
47 16 preparser(on=True)
48
49 /usr/lib64/python2.6/site-packages/sage/all.py in <module>()
50 71
51 72 from sage.rings.all import *
52 ---> 73 from sage.matrix.all import *
53 74
54 75 # This must come before Calculus -- it initializes the Pynac
55 library.
56
57 /usr/lib64/python2.6/site-packages/sage/matrix/all.py in <module>()
58 ----> 1
59 2
60 3 from matrix_space import MatrixSpace, is_MatrixSpace
61 4 from constructor import matrix, Matrix, random_matrix,
62 diagonal_matrix, identity_matrix, block_matrix, block_diagonal_matrix,
63 jordan_block, zero_matrix 5 from matrix import is_Matrix 6 from
64 berlekamp_massey import berlekamp_massey 7
65
66 /usr/lib64/python2.6/site-packages/sage/matrix/matrix_space.pyc in
67 <module>() 35 import matrix_generic_sparse
68 36
69 ---> 37 import matrix_modn_dense
70 38 import matrix_modn_sparse
71 39
72
73 /usr/bin/matrix_integer_dense.pxd in init sage.matrix.matrix_modn_dense
74 (sage/matrix/matrix_modn_dense.c:14829)() 10
75 11
76 ---> 12
77 13
78 14
79
80 /usr/bin/linbox.pxd in init sage.matrix.matrix_integer_dense
81 (sage/matrix/matrix_integer_dense.c:39016)() 5
82 6
83 ----> 7
84 8
85 9
86
87 ImportError: /usr/lib/liblinboxsage.so.0: undefined symbol: dgetri_
88 Error importing ipy_profile_sage - perhaps you should run %upgrade?
89 WARNING: Loading of ipy_profile_sage failed.
90 ########### Qoute ends ##########
91
92 Regards,
93 Vladimir
94 -----
95 <v_2e@×××.net>

Replies

Subject Author
Re: [gentoo-science] [sage-on-gentoo] Sage-4.5.2 build problem and a "run-time" errors. Christopher Schwan <cschwan@××××××××××××××××××.de>