| 1 |
On Sat, Aug 24, 2013 at 6:57 PM, François Bissey <fbissey@××××××××××××.nz>wrote: |
| 2 |
|
| 3 |
> On 2013-08-24 03:30, P Purkayastha wrote: |
| 4 |
> |
| 5 |
>> Are you sure? They are all valid (though equery resolves the links): |
| 6 |
>> |
| 7 |
>> ~» equery b /usr/lib/{libcblas.so,libf77blas.so,libatlas.so} |
| 8 |
>> * Searching for |
| 9 |
>> /usr/lib/libcblas.so,/usr/lib/libf77blas.so,/usr/lib/libatlas.so ... |
| 10 |
>> sci-libs/atlas-3.10.1-r1 (/usr/lib64/libatlas.so.3) |
| 11 |
>> sci-libs/atlas-3.10.1-r1 (/usr/lib64/libf77blas.so.3) |
| 12 |
>> sci-libs/gsl-1.14 (/usr/lib64/libgslcblas.so.0.0.0) |
| 13 |
>> |
| 14 |
>> atlas 3.10.1 and gsl 1.14 _at_the_same_time_? You have a mix of the old |
| 15 |
> virtual from the main tree and new libraries from the science overlay. |
| 16 |
> |
| 17 |
> Portage will complain (yesterday). |
| 18 |
> |
| 19 |
> When you decide to do the clean up be sure to post here so we can |
| 20 |
> make sure you are back in a sane state. |
| 21 |
> |
| 22 |
> Francois |
| 23 |
> |
| 24 |
> |
| 25 |
Portage did complain today. I had to unmask eselect::gentoo and |
| 26 |
gsl::science. Then I upgraded and it had the following changes to show |
| 27 |
|
| 28 |
~» quietemerge -uDv world $QEMERGE |
| 29 |
--------------------------------------------------- Pretended emerge |
| 30 |
--------------------------------------------------- |
| 31 |
|
| 32 |
These are the packages that would be merged, in order: |
| 33 |
|
| 34 |
Calculating dependencies .. ... .. ... .. .......... done! |
| 35 |
[ebuild U ] sys-libs/timezone-data-2013c [2013b] USE="nls" 346 kB |
| 36 |
[ebuild U ] media-libs/tiff-4.0.3-r4 [4.0.3-r2] USE="cxx jpeg lzma zlib |
| 37 |
-jbig -static-libs" 0 kB |
| 38 |
[ebuild U ] dev-libs/klibc-1.5.25 [1.5.23] USE="-debug" 499 kB |
| 39 |
[ebuild U ] dev-lang/python-2.7.5-r2:2.7 [2.7.5:2.7] USE="gdbm ncurses |
| 40 |
readline sqlite ssl threads (wide-unicode) xml -berkdb -build -doc |
| 41 |
-examples -hardened -ipv6 -tk -wininst" 0 kB |
| 42 |
[ebuild UD~] app-admin/eselect-1.3.6::gentoo [1.3.7-r100::science] |
| 43 |
USE="-doc (-emacs%) (-vim-syntax%*)" 164 kB |
| 44 |
[ebuild U ~] sys-apps/portage-2.2.1 [2.2.0] USE="(ipc) xattr -build -doc |
| 45 |
-epydoc (-pypy2_0) -python2 -python3 (-selinux)" LINGUAS="-ru" |
| 46 |
PYTHON_TARGETS="python2_7 (-pypy1_9) -pypy2_0 -python2_6 (-python3_1) |
| 47 |
-python3_2 -python3_3 (-python3_4)" 881 kB |
| 48 |
[ebuild U ~] sci-libs/gsl-1.16-r1::science [1.14::gentoo] |
| 49 |
USE="-cblas-external -static-libs%" 3,452 kB |
| 50 |
[ebuild N ] app-shells/bash-completion-1.3-r2 0 kB |
| 51 |
[ebuild U ~] media-libs/fontconfig-2.10.93:1.0 [2.10.92:1.0] USE="-doc |
| 52 |
-static-libs" ABI_X86="(64) -32 (-x32)" 1,491 kB |
| 53 |
|
| 54 |
Total: 9 packages (7 upgrades, 1 downgrade, 1 new), Size of downloads: |
| 55 |
6,830 kB |
| 56 |
|
| 57 |
WARNING: One or more updates have been skipped due to a dependency conflict: |
| 58 |
|
| 59 |
app-admin/eselect:0 |
| 60 |
|
| 61 |
(app-admin/eselect-1.3.7-r100::science, ebuild scheduled for merge) |
| 62 |
conflicts with |
| 63 |
<app-admin/eselect-1.3.7 required by |
| 64 |
(app-shells/bash-completion-1.3-r2::gentoo, ebuild scheduled for merge) |
| 65 |
|
| 66 |
|
| 67 |
The links are still there, so nothing got hosed till now :-) |
| 68 |
|
| 69 |
~» equery b /usr/lib/{libcblas.so,libf77blas.so,libatlas.so} |
| 70 |
* Searching for |
| 71 |
/usr/lib/libcblas.so,/usr/lib/libf77blas.so,/usr/lib/libatlas.so ... |
| 72 |
sci-libs/atlas-3.10.1-r1 (/usr/lib64/libatlas.so.3) |
| 73 |
sci-libs/atlas-3.10.1-r1 (/usr/lib64/libf77blas.so.3) |
| 74 |
sci-libs/gsl-1.16-r1 (/usr/lib64/libgslcblas.so.0.0.0) |
| 75 |
|
| 76 |
Thanks for the warning, though. I am still trying to compile sage in my |
| 77 |
home directory though. Currently stuck at scipy since it can't find ATLAS. |
| 78 |
:-( I will try to trouble shoot and probably mail sage-devel about this. |
Archives