Gentoo Archives: gentoo-science

From: Christopher Schwan <cschwan@××××××××××××××××××.de>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] 'emerge -vuND sage' fails due to issues with masking.
Date: Mon, 22 Aug 2011 09:45:22
Message-Id: 23893388.0cAe6xTicH@cschwan-laptop
In Reply to: [gentoo-science] 'emerge -vuND sage' fails due to issues with masking. by rose@rz.uni-potsdam.de
1 On Monday 22 August 2011 11:29:34 rose@××××××××××××××.de wrote:
2 > 'emerge -vuND sage' now fails for me with:
3 >
4 > root@caiman:/root(61)# emerge -vuND sage
5 >
6 > These are the packages that would be merged, in order:
7 >
8 > Calculating dependencies... done!
9 > [ebuild U #] sci-mathematics/sage-baselayout-4.7.2_alpha1 [4.7.1]
10 > USE="X -debug -testsuite" 1,111 kB [1]
11 > [ebuild U ] sci-mathematics/sage-extcode-4.7.2_alpha1 [4.7.1]
12 > 11,894 kB [1]
13 > [ebuild N ] sci-mathematics/pari-data-20110727 45,753 kB [0]
14 > [ebuild UD ] dev-python/pexpect-2.0 [2.4-r1] USE="(-doc%*)
15 > (-examples%*)" 0 kB [1]
16 > [ebuild UD ] dev-python/numpy-1.5.1 [1.6.1] USE="doc lapack -test"
17 > 0 kB [0]
18 > [ebuild U ] sci-mathematics/sage-notebook-0.8.20 [0.8.19]
19 > USE="java" 18,442 kB [1]
20 > [ebuild N ] sci-mathematics/pari-2.5.0-r3 USE="X data doc fltk
21 > gmp" 2,651 kB [0]
22 > [ebuild N ] dev-python/mpmath-0.17 USE="doc examples gmp
23 > -matplotlib -test" 0 kB [0]
24 > [ebuild N ] sci-libs/flint-1.6 USE="doc ntl -test" 0 kB [1]
25 > [ebuild N #] sci-mathematics/sage-doc-4.7.2_alpha1 USE="pdf
26 > -html" 53,162 kB [1]
27 > [ebuild N ] sci-mathematics/eclib-20100711 USE="-pari24" 0 kB [1]
28 > [ebuild N #] sci-mathematics/lcalc-1.23-r4 USE="pari" 0 kB [1]
29 > [ebuild N ] dev-python/sympy-0.7.1 USE="doc examples gtk latex
30 > opengl pdf png texmacs -imaging -ipython -mathml -test" 0 kB [0]
31 > [ebuild N ] sci-mathematics/sympow-1.018.1_p8-r1 USE="-pari24" 0 kB
32 > [1] [ebuild N ] sci-mathematics/genus2reduction-0.3_p8-r1 0 kB [1]
33 > [ebuild N ] dev-python/networkx-1.2 USE="examples" 0 kB [1]
34 > [ebuild N ] dev-tex/sage-latex-2.2.5-r2 USE="examples" 0 kB [1]
35 > [ebuild N ] sci-mathematics/polybori-0.7.1 USE="doc gd sage" 0 kB [1]
36 > [ebuild N #] sci-mathematics/sage-clib-4.7.2_alpha1 0 kB [1]
37 > [ebuild N #] sci-mathematics/sage-4.7.2_alpha1 USE="examples
38 > latex -mpc -testsuite" 0 kB [1]
39 >
40 > Total: 20 packages (3 upgrades, 2 downgrades, 15 new), Size of
41 > downloads: 133,011 kB
42 > Portage tree and overlays:
43 > [0] /usr/portage
44 > [1] /var/lib/layman/sage-on-gentoo
45 >
46 > The following mask changes are necessary to proceed:
47 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
48 > # /etc/portage/package.mask:
49 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
50 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
51 > # preparing 4.7.2
52 >
53 > > =sci-mathematics/lcalc-1.23-r4
54 >
55 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
56 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
57 > # preparing 4.7.2
58 >
59 > > =sci-mathematics/sage-clib-4.7.2_alpha1
60 >
61 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
62 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
63 > # preparing 4.7.2
64 >
65 > > =sci-mathematics/sage-baselayout-4.7.2_alpha1
66 >
67 > #required by sage (argument)
68 > # /etc/portage/package.mask:
69 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
70 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
71 > # preparing 4.7.2
72 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
73 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
74 > # preparing 4.7.2
75 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
76 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
77 > # preparing 4.7.2
78 > #required by sage (argument)
79 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
80 > # preparing 4.7.2
81 >
82 > > =sci-mathematics/sage-4.7.2_alpha1
83 >
84 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
85 > # /etc/portage/package.mask:
86 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
87 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
88 > # preparing 4.7.2
89 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
90 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
91 > # preparing 4.7.2
92 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
93 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
94 > # preparing 4.7.2
95 > #required by sage (argument)
96 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
97 > # preparing 4.7.2
98 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
99 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
100 > # preparing 4.7.2
101 >
102 > > =sci-mathematics/sage-doc-4.7.2_alpha1
103 >
104 > But I think that I have just set this requested masking
105 > /etc/portage/package.maks:
106 >
107 >
108 > root@caiman:/root(62)# cat /etc/portage/package.mask
109 >
110 > > =dev-java/jgraphx-1.4.1.1
111 > > =sci-libs/sprng-4.0
112 >
113 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
114 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
115 > # preparing 4.7.2
116 >
117 > > =sci-mathematics/lcalc-1.23-r4
118 >
119 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
120 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
121 > # preparing 4.7.2
122 >
123 > > =sci-mathematics/sage-clib-4.7.2_alpha1
124 >
125 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
126 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
127 > # preparing 4.7.2
128 >
129 > > =sci-mathematics/sage-baselayout-4.7.2_alpha1
130 >
131 > #required by sage (argument)
132 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
133 > # preparing 4.7.2
134 >
135 > > =sci-mathematics/sage-4.7.2_alpha1
136 >
137 > #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
138 > # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
139 > # preparing 4.7.2
140 >
141 > > =sci-mathematics/sage-doc-4.7.2_alpha1
142 >
143 > Any hint is apprecieated.
144
145 Hi,
146
147 I dont know why portage wants to install 4.7.2_alpha1 but it should not - the
148 latest stable is 4.7.1. Refresh your overlay (I just made a small change) and
149 try again. Also, do not forget to compile sage-baselayout and sage itself with
150 USE=testsuite because 4.7.1 is broken without (see other thread on the list).
151 If it does not work, send me a list of already installed sage packages and
152 their corresponding versions. If you are using eix, type
153
154 eix -I sage-
155
156 to get that list.
157
158 Cheers,
159 Christopher

Replies

Subject Author
Re: [gentoo-science] 'emerge -vuND sage' fails due to issues with masking. rose@××××××××××××××.de