[gentoo-user] Re: Consequences of updating the system on December 13

[gevisz]

2015-12-19 22:26 GMT+02:00 gevisz <gevisz@×××××.com>:
> After a system update on December 13, 2015, I have found out
> that gnome-disks command does not start any more.

It was a nice consequece of updating openrc and changing
behaviour of localmount.

The similar situation is described (by someone else) here:
http://www.linux.org.ru/forum/general/12190879

Thank you to all who replied to my previous e-mail.

>When trying, it reports the following:
>
>  $ gnome-disks
>
> (gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
>
> (gnome-disks:4828): GLib-GObject-CRITICAL **:
> g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
> (instance)' failed
>
> (gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
>
> (gnome-disks:4828): GLib-GObject-CRITICAL **:
> g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
> (instance)' failed
>
> (gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
>
> (gnome-disks:4828): GLib-GObject-CRITICAL **:
> g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
> (instance)' failed
>
> (gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
>
> (gnome-disks:4828): GLib-GObject-CRITICAL **:
> g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
> (instance)' failed
>
> (gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
>
> (gnome-disks:4828): GLib-GObject-CRITICAL **:
> g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
> (instance)' failed
>
> (gnome-disks:4828): GLib-GObject-CRITICAL **: g_object_unref:
> assertion 'G_IS_OBJECT (object)' failed
>
> (gnome-disks:4828): GNOME-Disks-ERROR **: Error getting udisks client:
> Could not connect: No such file or directory
> Trace/breakpoint trap
>
> Recompiling of gnome-disk-utility does not help anyway.
> The package compiles almost nomarly but somewhere in the middle reports:
>
> gducreatediskimagedialog.c:498:7: warning:
> 'gtk_dialog_get_action_area' is deprecated (declared at
> /usr/include/gtk-3.0/gtk/gtkdialog.h:205) [-Wdeprecated-declarations]
>        gtk_button_box_set_child_secondary (GTK_BUTTON_BOX
> (gtk_dialog_get_action_area (GTK_DIALOG (dialog))),
>        ^
> gducreatediskimagedialog.c: In function 'check_overwrite':
> gducreatediskimagedialog.c:933:3: warning:
> 'gtk_dialog_set_alternative_button_order' is deprecated (declared at
> /usr/include/gtk-3.0/gtk/gtkdialog.h:187) [-Wdeprecated-declarations]
>    gtk_dialog_set_alternative_button_order (GTK_DIALOG (dialog),
>    ^
> gdupasswordstrengthwidget.c: In function
> 'gdu_password_strength_widget_constructed':
> gdupasswordstrengthwidget.c:205:7: warning: 'gtk_misc_set_alignment'
> is deprecated (declared at
> /usr/include/gtk-3.0/gtk/deprecated/gtkmisc.h:72)
> [-Wdeprecated-declarations]
>        gtk_misc_set_alignment (GTK_MISC (label), 0, 0.5);
>        ^
> gdupasswordstrengthwidget.c:205:7: warning: 'gtk_misc_get_type' is
> deprecated (declared at
> /usr/include/gtk-3.0/gtk/deprecated/gtkmisc.h:70)
> [-Wdeprecated-declarations]
>
> Moreover, I cannot print any more. (Have not checked it more than once, though.)
>
> Any ideas, except that I should not update the system on December 13?
>
> I use xfce4 but still on the default/linux/amd64/13.0/desktop/gnome profile.
>
> The output of the system update on that day was as following:
>
> # emerge --update --deep --with-bdeps=y --newuse --backtrack=90 --ask world
>
> These are the packages that would be merged, in order:
>
> Calculating dependencies... done!
> [ebuild   R    ] dev-lang/python-exec-2.0.1-r1  PYTHON_TARGETS="(-jython2_5%*)"
> [ebuild     U  ] sys-apps/busybox-1.24.1 [1.23.1-r1]
> [ebuild     U  ] x11-proto/xproto-7.0.28 [7.0.27]
> [ebuild     U  ] x11-libs/libdrm-2.4.65 [2.4.59] USE="-valgrind%"
> VIDEO_CARDS="-amdgpu%"
> [ebuild     U  ] x11-proto/kbproto-1.0.7 [1.0.6-r1]
> [ebuild     U  ] x11-proto/randrproto-1.5.0 [1.4.0-r1]
> [ebuild     U  ] media-fonts/font-util-1.3.1 [1.3.0]
> [ebuild     U  ] x11-libs/libpciaccess-0.13.4 [0.13.3]
> [ebuild     U  ] x11-libs/libXdmcp-1.1.2 [1.1.1-r1]
> [ebuild     U  ] x11-libs/libfontenc-1.1.3 [1.1.2]
> [ebuild     U  ] x11-base/xorg-drivers-1.17 [1.16]
> VIDEO_CARDS="-amdgpu% (-tegra)"
> [ebuild  N     ] app-misc/c_rehash-1.7-r1
> [ebuild     U  ] dev-libs/openssl-1.0.2e [1.0.2d]
> [blocks b      ] <dev-libs/openssl-1.0.2d-r1:0
> ("<dev-libs/openssl-1.0.2d-r1:0" is blocking app-misc/c_rehash-1.7-r1)
> [ebuild     U  ] dev-perl/Net-SMTP-SSL-1.30.0 [1.10.0-r1] USE="{-test%}"
> [ebuild     U  ] dev-libs/libevdev-1.4.4 [1.3]
> [ebuild  NS    ] dev-python/beautifulsoup-4.3.2 [3.2.1-r1] USE="-doc
> {-test}" PYTHON_TARGETS="python2_7 python3_4 (-pypy) (-pypy3)
> -python3_3"
> [ebuild  r  U  ] x11-libs/libxcb-1.11.1 [1.11-r1]
> [ebuild     U  ] x11-libs/libX11-1.6.3 [1.6.2]
> [ebuild  rR    ] x11-libs/xcb-util-renderutil-0.3.9-r1
> [ebuild  rR    ] x11-libs/xcb-util-wm-0.4.1-r1
> [ebuild  rR    ] x11-libs/xcb-util-keysyms-0.4.0
> [ebuild     U  ] x11-libs/libXrender-0.9.9 [0.9.8]
> [ebuild     U  ] x11-libs/libxkbfile-1.0.9 [1.0.8]
> [ebuild     U  ] x11-libs/libXi-1.7.5 [1.7.4]
> [ebuild     U  ] x11-libs/libXrandr-1.5.0 [1.4.2]
> [ebuild     U  ] x11-misc/xkeyboard-config-2.16 [2.14]
> [ebuild     U  ] x11-apps/setxkbmap-1.3.1 [1.3.0]
> [ebuild     U  ] dev-python/certifi-2015.11.20 [2015.9.6.2]
> [ebuild  N     ] dev-python/html5lib-0.9999999  USE="{-test}"
> PYTHON_TARGETS="python2_7 python3_4 (-pypy) (-pypy3) -python3_3
> (-python3_5)"
> [ebuild  rR    ] x11-libs/xcb-util-0.4.0
> [ebuild  rR    ] x11-libs/xcb-util-image-0.4.0
> [ebuild     U  ] x11-libs/xcb-util-cursor-0.1.2 [0.1.1-r1]
> [ebuild     U  ] dev-libs/libinput-1.1.0 [1.0.1]
> [ebuild     U  ] x11-libs/libXt-1.1.5 [1.1.4]
> [ebuild     U  ] x11-libs/libXaw-1.0.13 [1.0.12]
> [ebuild   R    ] app-text/xmlto-0.0.26-r1  USE="text%*"
> [ebuild     U  ] x11-apps/xauth-1.0.9-r2 [1.0.9-r1]
> [ebuild     U  ] sys-apps/portage-2.2.24 [2.2.20.1]
> PYTHON_TARGETS="(-python3_5)"
> [ebuild     U  ] x11-apps/xinit-1.3.4-r1 [1.3.3-r1] USE="-systemd%"
> [ebuild     U  ] sys-apps/man-pages-4.02 [4.00]
> [ebuild     U  ] app-eselect/eselect-opengl-1.3.1-r4 [1.2.7]
> [ebuild     U  ] x11-proto/glproto-1.4.17-r1 [1.4.17]
> [blocks b      ] <x11-proto/glproto-1.4.17-r1
> ("<x11-proto/glproto-1.4.17-r1" is blocking
> app-eselect/eselect-opengl-1.3.1-r4)
> [ebuild     U  ] media-libs/mesa-11.0.6 [10.3.7-r1] USE="-d3d9% -vaapi%"
> [blocks b      ] =media-libs/mesa-10.3.7-r1
> ("=media-libs/mesa-10.3.7-r1" is blocking
> app-eselect/eselect-opengl-1.3.1-r4)
> [ebuild     U  ] media-libs/libepoxy-1.3.1 [1.2]
> [ebuild     U  ] x11-base/xorg-server-1.17.4 [1.16.4] USE="(-libressl) -xephyr%"
> [blocks b      ] =x11-base/xorg-server-1.16.4
> ("=x11-base/xorg-server-1.16.4" is blocking
> app-eselect/eselect-opengl-1.3.1-r4)
> [blocks b      ] >=app-eselect/eselect-opengl-1.3.0
> (">=app-eselect/eselect-opengl-1.3.0" is blocking
> x11-base/xorg-server-1.16.4)
> [ebuild  rR    ] x11-drivers/xf86-video-ati-7.5.0
> [ebuild     U  ] x11-drivers/xf86-input-evdev-2.9.2 [2.9.1]
> [ebuild     U  ] media-libs/freeglut-3.0.0 [2.8.1-r1]
> [ebuild     U  ] dev-java/icedtea-bin-7.2.6.3 [7.2.6.2]
> [ebuild     U  ] sys-apps/openrc-0.18.4 [0.17]
> [ebuild     U  ] www-client/chromium-47.0.2526.80 [46.0.2490.86]
> USE="hangouts%* (-gtk3) (-system-ffmpeg) -widevine%"
>
> The following packages are causing rebuilds:
>
>   (x11-libs/libxcb-1.11.1:0/1.11.1::gentoo, ebuild scheduled for
> merge) causes rebuilds for:
>     (x11-libs/xcb-util-renderutil-0.3.9-r1:0/0::gentoo, ebuild
> scheduled for merge)
>     (x11-libs/xcb-util-wm-0.4.1-r1:0/0::gentoo, ebuild scheduled for merge)
>     (x11-libs/xcb-util-image-0.4.0:0/0::gentoo, ebuild scheduled for merge)
>     (x11-libs/xcb-util-0.4.0:0/0::gentoo, ebuild scheduled for merge)
>     (x11-libs/xcb-util-keysyms-0.4.0:0/0::gentoo, ebuild scheduled for merge)
>   (x11-base/xorg-server-1.17.4:0/1.17.4::gentoo, ebuild scheduled for
> merge) causes rebuilds for:
>     (x11-drivers/xf86-video-ati-7.5.0:0/0::gentoo, ebuild scheduled for merge)
>
> Would you like to merge these packages? [Yes/No] y
> ...
>>>> Installing (51 of 51) www-client/chromium-47.0.2526.80::gentoo
>  * >>> SetUID: [chmod go-r] /usr/lib64/chromium-browser/chrome-sandbox
> ...
>                  [ ok ]
>  * Updating icons cache ...
>
>                  [ ok ]
>  * Updating desktop mime database ...
>  * Updating icons cache ...
>
>                  [ ok ]
>
>  * Messages for package sys-apps/busybox-1.24.1:
>
>  * Could not locate user configfile, so we will save a default one
>  * Your configuration for sys-apps/busybox-1.24.1 has been saved in
>  * /etc/portage/savedconfig/sys-apps/busybox-1.24.1 for your editing pleasure.
>  * You can edit these files by hand and remerge this package with
>  * USE=savedconfig to customise the configuration.
>  * You can rename this file/directory to one of the following for
>  * its configuration to apply to multiple versions:
>  * ${PORTAGE_CONFIGROOT}/etc/portage/savedconfig/
>  * [${CTARGET}|${CHOST}|""]/${CATEGORY}/[${PF}|${P}|${PN}]
>
>  * Messages for package x11-libs/libXi-1.7.5:
>
>  * Some special keys and keyboard layouts may stop working.
>  * To fix them, recompile xorg-server.
>
>  * Messages for package x11-apps/xinit-1.3.4-r1:
>
>  * If you use startx to start X instead of a login manager like gdm/kdm,
>  * you can set the XSESSION variable to anything in /etc/X11/Sessions/ or
>  * any executable. When you run startx, it will run this as the login session.
>  * You can set this in a file in /etc/env.d/ for the entire system,
>  * or set it per-user in ~/.bash_profile (or similar for other shells).
>  * Here's an example of setting it for the whole system:
>  *     echo XSESSION="Gnome" > /etc/env.d/90xsession
>  *     env-update && source /etc/profile
>
>  * Messages for package x11-proto/glproto-1.4.17-r1:
>
>  * This package will overwrite one or more files that may belong to other
>  * packages (see list below). You can use a command such as `portageq
> owners / <filename>` to identify the installed package that owns a
>  * file. If portageq reports that only one package owns a file then do
>  * NOT file a bug report. A bug report is only useful if it identifies at
>  * least two or more packages that are known to install the same file(s).
>  * If a collision occurs and you can not explain where the file came from
>  * then you should simply ignore the collision since there is not enough
>  * information to determine if a real problem exists. Please do NOT file
>  * a bug report at http://bugs.gentoo.org unless you report exactly which
>  * two packages install the same file(s). See
>  * http://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how to
>  * solve the problem. And once again, please do NOT file a bug report
>  * unless you have completely understood the above message.
>  *
>  * Detected file collision(s):
>  *
>  *     /usr/include/GL/glxmd.h
>  *     /usr/include/GL/glxtokens.h
>  *     /usr/include/GL/glxproto.h
>  *
>  * Searching all installed packages for file collisions...
>  *
>  * Press Ctrl-C to Stop
>  *
>  * None of the installed packages claim the file(s).
>  *
>  * Package 'x11-proto/glproto-1.4.17-r1' merged despite file collisions.
>  * If necessary, refer to your elog messages for the whole content of the
>  * above message.
>
>  * Messages for package media-libs/mesa-11.0.6:
>
>  * This package will overwrite one or more files that may belong to other
>  * packages (see list below). You can use a command such as `portageq
>  * owners / <filename>` to identify the installed package that owns a
>  * file. If portageq reports that only one package owns a file then do
>  * NOT file a bug report. A bug report is only useful if it identifies at
>  * least two or more packages that are known to install the same file(s).
>  * If a collision occurs and you can not explain where the file came from
>  * then you should simply ignore the collision since there is not enough
>  * information to determine if a real problem exists. Please do NOT file
>  * a bug report at http://bugs.gentoo.org unless you report exactly which
>  * two packages install the same file(s). See
>  * http://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how to
>  * solve the problem. And once again, please do NOT file a bug report
>  * unless you have completely understood the above message.
>  *
>  * Detected file collision(s):
>  *
>  *     /usr/include/GL/gl.h
>  *     /usr/include/GL/glx.h
>  *     /usr/include/GL/glxext.h
>  *     /usr/include/GL/glext.h
>  *     /usr/include/KHR/khrplatform.h
>  *     /usr/include/GLES2/gl2ext.h
>  *     /usr/include/GLES2/gl2platform.h
>  *     /usr/include/GLES2/gl2.h
>  *     /usr/include/EGL/egl.h
>  *     /usr/include/EGL/eglext.h
>  *     /usr/include/EGL/eglplatform.h
>  *     /usr/include/EGL/eglmesaext.h
>  *     /usr/include/EGL/eglextchromium.h
>  *     /usr/include/GLES3/gl3platform.h
>  *     /usr/include/GLES3/gl3ext.h
>  *     /usr/include/GLES3/gl3.h
>  *     /usr/include/GLES3/gl31.h
>  *     /usr/lib32/libGL.so.1
>  *     /usr/lib32/libGL.so
>  *     /usr/lib32/libGLESv2.so.2
>  *     /usr/lib32/libEGL.so.1
>  *     /usr/lib32/libEGL.so
>  *     /usr/lib32/libGLESv2.so
>  *     /usr/lib64/libGL.so.1
>  *     /usr/lib64/libGL.so
>  *     /usr/lib64/libGLESv2.so.2
>  *     /usr/lib64/libEGL.so.1
>  *     /usr/lib64/libEGL.so
>  *     /usr/lib64/libGLESv2.so
>  *
>  * Searching all installed packages for file collisions...
>  *
>  * Press Ctrl-C to Stop
>  *
>  * None of the installed packages claim the file(s).
>  *
>  * Package 'media-libs/mesa-11.0.6' merged despite file collisions. If
>  * necessary, refer to your elog messages for the whole content of the
>  * above message.
>  * USE="bindist" was not set. Potentially patent encumbered code was
>  * enabled. Please see patents.txt for an explanation.
>
>  * Messages for package x11-base/xorg-server-1.17.4:
>
>  * This package will overwrite one or more files that may belong to other
>  * packages (see list below). You can use a command such as `portageq
>  * owners / <filename>` to identify the installed package that owns a
>  * file. If portageq reports that only one package owns a file then do
>  * NOT file a bug report. A bug report is only useful if it identifies at
>  * least two or more packages that are known to install the same file(s).
>  * If a collision occurs and you can not explain where the file came from
>  * then you should simply ignore the collision since there is not enough
>  * information to determine if a real problem exists. Please do NOT file
>  * a bug report at http://bugs.gentoo.org unless you report exactly which
>  * two packages install the same file(s). See
>  * http://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how to
>  * solve the problem. And once again, please do NOT file a bug report
>  * unless you have completely understood the above message.
>  *
>  * Detected file collision(s):
>  *
>  *     /usr/lib64/xorg/modules/extensions/libglx.so
>  *
>  * Searching all installed packages for file collisions...
>  *
>  * Press Ctrl-C to Stop
>  *
>  * None of the installed packages claim the file(s).
>  *
>  * Package 'x11-base/xorg-server-1.17.4' merged despite file collisions.
>  * If necessary, refer to your elog messages for the whole content of the
>  * above message.
>
>  * Messages for package sys-apps/openrc-0.18.4:
>
>  * /etc/mtab will be replaced with a
>  * symbolic link to /proc/self/mounts on the next
>  * reboot.
>  * Change the setting in /etc/conf.d/mtab
>  * if you do not want this to happen.
>  * In this version of OpenRC, the loopback interface no longer
>  * satisfies the net virtual.
>  * If you have services now which do not start because of this,
>  * They can be fixed by adding rc_need="!net"
>  * to the /etc/conf.d/<servicename> file.
>  * You should also file a bug against the service asking that
>  * need net be dropped from the dependencies.
>  * The bug you file should block the following tracker:
>  * https://bugs.gentoo.org/show_bug.cgi?id=439092
>  *
>  * Bug https://bugs.gentoo.org/show_bug.cgi?id=427996 was not
>  * fixed correctly in earlier versions of OpenRC.
>  * The correct fix is implemented in this version, but that
>  * means netmount needs to be added to the default runlevel if
>  * you are using nfs file systems.
>  *
>  * You should now update all files in /etc, using etc-update
>  * or equivalent before restarting any services or this host.
>>>> Auto-cleaning packages...
>
>>>> No outdated packages were found on your system.
>
>  * GNU info directory index is up-to-date.
>
>  * IMPORTANT: config file '/etc/rc.conf' needs updating.
>
>  * IMPORTANT: 2 config files in '/usr/share/X11/xkb/symbols/' need updating.
>  * See the CONFIGURATION FILES section of the emerge
>  * man page to learn how to update config files.
>  * After world updates, it is important to remove obsolete packages with
>  * emerge --depclean. Refer to `man emerge` for more information.
>
> # emerge --depclean --backtrack=90 --ask
>>>> Nothing to clean.
>
> # revdep-rebuild
>>>> Done.