Gentoo Archives: gentoo-user

From: Zhu Sha Zang <zhushazang@×××××××××.br>
To: gentoo-user@l.g.o
Subject: [gentoo-user] Doubt about R support in gentoo
Date: Sat, 19 Nov 2016 14:47:27
Message-Id: e5b993aa-1bf2-9a90-f1f4-987ad6310a39@yahoo.com.br
1 Hello everybody...
2
3
4 A single doubt here:
5
6
7 After an upgrade in package dev-libs/icu (from 57.1 to 58.1-r1) i tried
8 a package upgrade inside R and got that:
9
10
11 /> update.packages(checkBuilt=TRUE, ask=FALSE,
12 repos='http://cran.us.r-project.org')
13 trying URL 'http://cran.us.r-project.org/src/contrib/knitr_1.15.tar.gz'
14 Content type 'application/x-gzip' length 1027358 bytes (1003 KB)
15 ==================================================
16 downloaded 1003 KB
17
18 * installing *source* package ‘knitr’ ...
19 ** package ‘knitr’ successfully unpacked and MD5 sums checked
20 ** R
21 ** demo
22 ** inst
23 ** preparing package for lazy loading
24 Error in dyn.load(file, DLLpath = DLLpath, ...) :
25 *unable to load shared object
26 '/usr/lib64/R/library/stringi/libs/stringi.so':**
27 ** libicui18n.so.57: cannot open shared object file: No such file or
28 directory*
29 Error : unable to load R code in package ‘knitr’
30 ERROR: lazy loading failed for package ‘knitr’
31 * removing ‘/usr/lib64/R/library/knitr’
32 * restoring previous ‘/usr/lib64/R/library/knitr’
33
34 The downloaded source packages are in
35 ‘/tmp/RtmpKBphr0/downloaded_packages’
36 Updating HTML index of packages in '.Library'
37 Making 'packages.html' ... done
38 Warning message:
39 In install.packages(update[instlib == l, "Package"], l, contriburl =
40 contriburl, :
41 installation of package ‘knitr’ had non-zero exit status
42 /
43
44
45 This kind of "bug" can I put inside bugs.gentoo.org or its a cran
46 package bug?
47
48 It is not the first time and i'm in dout about how to proceed.
49
50
51 Thanks anyway.
52
53 Best regards!!
54
55 //

Replies

Subject Author
Re: [gentoo-user] Doubt about R support in gentoo Alec Ten Harmsel <alec@××××××××××××××.com>
[gentoo-user] Re: Doubt about R support in gentoo Michael Palimaka <kensington@g.o>