Re: [gentoo-amd64] glibc update problem

[Jan Riedel]

hi rupert,

i would say you have an hardware problem. the machine check exception
tells me that there is something wrong with your system memory. probably
the memory module on bank 0 of cpu 0 is causing errors.
i also ran in those problems a few month ago. i replaced the system
memory an everything was fine from that moment. in my system log
messages like "machine check events ..." occured. additional information
about machine check events you can get if you are merging
app-admin/mcelog and run "mcelog --k8" on opteron systems when mce's occur.
i would suggest you to replace the memory module on bank 0.

regards
jan



Rupert Young (Restart) wrote:
> Hi,
>
>
>
> Our server is getting stuck on updating packages. We can not seem to get
> past the upgrade to glibc. Sometimes it fails, with an error, and
> sometimes it actually kills the machine requiring reboot, examples of
> both below. Sorry if this is a known problem, but I’ve been looking and
> struggling with it for a couple of weeks. Any help would be appreciated,
> here’s the info from emerge,
>
>
>
> emerge --info
>
>
>
>
>
> Gentoo Base System version 1.6.14
>
> Portage 2.0.54 (default-linux/x86/2006.0, gcc-3.4.4, glibc-2.3.5-r1,
> 2.6.7-gentoo-r14 x86_64)
>
> =================================================================
>
> System uname: 2.6.7-gentoo-r14 x86_64 AMD Opteron(tm) Processor 250
>
> dev-lang/python:     2.3.5-r2, 2.4.2
>
> sys-apps/sandbox:    1.2.12
>
> sys-devel/autoconf:  2.13, 2.59-r6
>
> sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1
>
> sys-devel/binutils:  2.16.1
>
> sys-devel/libtool:   1.5.22
>
> virtual/os-headers:  2.6.11-r2
>
> ACCEPT_KEYWORDS="x86"
>
> AUTOCLEAN="yes"
>
> CBUILD="x86_64-pc-linux-gnu"
>
> CFLAGS="-mtune=opteron -march=opteron -O3 -funroll-loops
> -fomit-frame-pointer -fprefetch-loop-arrays -pipe -ftracer -mmmx -msse
> -msse2 -m3dnow -mfpmath=sse"
>
> CHOST="x86_64-pc-linux-gnu"
>
> CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config
> /usr/lib/X11/xkb /usr/lib64/mozilla/defaults/pref /usr/share/config
> /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/
> /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/
> /usr/share/texmf/xdvi/ /var/qmail/control"
>
> CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d"
>
> CXXFLAGS="-mtune=opteron -march=opteron -O3 -funroll-loops
> -fomit-frame-pointer -fprefetch-loop-arrays -pipe -ftracer -mmmx -msse
> -msse2 -m3dnow -mfpmath=sse"
>
> DISTDIR="/usr/portage/distfiles"
>
> FEATURES="autoconfig distlocks sandbox sfperms strict"
>
> GENTOO_MIRRORS="http://distfiles.gentoo.org
> http://distro.ibiblio.org/pub/linux/distributions/gentoo"
>
> MAKEOPTS="-j4"
>
> PKGDIR="/usr/portage/packages"
>
> PORTAGE_TMPDIR="/var/tmp"
>
> PORTDIR="/usr/portage"
>
> PORTDIR_OVERLAY="/usr/local/portage"
>
> SYNC="rsync://rsync.gentoo.org/gentoo-portage"
>
> USE="x86 3dnow X acpi alsa apache2 audiofile avi bitmap-fonts bzip2
> crypt cups dga eds emboss encode exif expat fam fbcon foomaticdb fortran
> gd gdbm gif glut gpm gstreamer gtk gtk2 imagemagick imlib ipv6 java
> jikes jpeg junit lcms libg++ libwww mad mailwrapper mhash mikmod mmx mng
> mozilla mp3 mpeg mysql ncurses nptl ogg oggvorbis opengl pam pcre pdflib
> png python quicktime readline samba sdl slang spell sse ssl tcpd tetex
> tiff truetype truetype-fonts type1-fonts udev userlocales vorbis xml
> xml2 xmms xv zlib userland_GNU kernel_linux elibc_glibc"
>
> Unset:  ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS
>
>
>
>
>
> The error from dying machine is,
>
>
>
> CPU 0: Machine check Exception 4 Bank 0: f60c200000000136
>
> TSC 177daa0cc8aof ADDR 1af80e80
>
> Kernal panic: Machine check
>
>
>
> The error msg from (non-dying)
>
> Emerge –av sys-lib/glic
>
>
>
> x86_64-pc-linux-gnu-gcc iso_2033.c -c -std=gnu99 -O2 -Wall -Winline
> -Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron
> -pipe   -fPIC    -I../include -I.
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata
> -I.. -I../libio
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads
> -I../sysdeps/x86_64/elf -I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
> -I../linuxthreads/sysdeps/unix/sysv/linux
> -I../linuxthreads/sysdeps/pthread -I../sysdeps/pthread
> -I../linuxthreads/sysdeps/unix/sysv -I../linuxthreads/sysdeps/unix
> -I../linuxthreads/sysdeps/x86_64 -I../libidn/sysdeps/unix
> -I../sysdeps/unix/sysv/linux/x86_64
> -I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
> -I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
> -I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
> -I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
> -I../sysdeps/x86_64 -I../sysdeps/wordsize-64
> -I../sysdeps/ieee754/ldbl-96 -I../sysdeps/ieee754/dbl-64
> -I../sysdeps/ieee754/flt-32 -I../sysdeps/ieee754
> -I../sysdeps/generic/elf -I../sysdeps/generic -nostdinc -isystem
> /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
> -D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
> -DNOT_IN_libc -o
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_2033.os
> -MD -MP -MF
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_2033.os.dt
> -MT
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_2033.os
>
> ../iconv/skeleton.c: In function `gconv_init':
>
> ../iconv/skeleton.c:350: internal compiler error: in expand_stmt, at
> c-semantics.c:883
>
> Please submit a full bug report,
>
> with preprocessed source if appropriate.
>
> See <URL:http://bugs.gentoo.org/> for instructions.
>
> x86_64-pc-linux-gnu-gcc iso_5427.c -c -std=gnu99 -O2 -Wall -Winline
> -Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron
> -pipe   -fPIC    -I../include -I.
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata
> -I.. -I../libio
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads
> -I../sysdeps/x86_64/elf -I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
> -I../linuxthreads/sysdeps/unix/sysv/linux
> -I../linuxthreads/sysdeps/pthread -I../sysdeps/pthread
> -I../linuxthreads/sysdeps/unix/sysv -I../linuxthreads/sysdeps/unix
> -I../linuxthreads/sysdeps/x86_64 -I../libidn/sysdeps/unix
> -I../sysdeps/unix/sysv/linux/x86_64
> -I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
> -I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
> -I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
> -I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
> -I../sysdeps/x86_64 -I../sysdeps/wordsize-64
> -I../sysdeps/ieee754/ldbl-96 -I../sysdeps/ieee754/dbl-64
> -I../sysdeps/ieee754/flt-32 -I../sysdeps/ieee754
> -I../sysdeps/generic/elf -I../sysdeps/generic -nostdinc -isystem
> /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
> -D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
> -DNOT_IN_libc -o
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_5427.os
> -MD -MP -MF
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_5427.os.dt
> -MT
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_5427.os
>
> x86_64-pc-linux-gnu-gcc iso_5427-ext.c -c -std=gnu99 -O2 -Wall -Winline
> -Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron
> -pipe   -fPIC    -I../include -I.
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata
> -I.. -I../libio
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads
> -I../sysdeps/x86_64/elf -I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
> -I../linuxthreads/sysdeps/unix/sysv/linux
> -I../linuxthreads/sysdeps/pthread -I../sysdeps/pthread
> -I../linuxthreads/sysdeps/unix/sysv -I../linuxthreads/sysdeps/unix
> -I../linuxthreads/sysdeps/x86_64 -I../libidn/sysdeps/unix
> -I../sysdeps/unix/sysv/linux/x86_64
> -I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
> -I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
> -I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
> -I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
> -I../sysdeps/x86_64 -I../sysdeps/wordsize-64
> -I../sysdeps/ieee754/ldbl-96 -I../sysdeps/ieee754/dbl-64
> -I../sysdeps/ieee754/flt-32 -I../sysdeps/ieee754
>
> -I../sysdeps/generic/elf -I../sysdeps/generic -nostdinc -isystem
> /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
> -D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
> -DNOT_IN_libc -o
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_5427-ext.os
> -MD -MP -MF
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_5427-ext.os.dt
> -MT
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_5427-ext.os
>
> The bug is not reproducible, so it is likely a hardware or OS problem.
>
> make[2]: ***
> [/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linuxthreads/iconvdata/iso_6937-2.os]
> Error 1
>
> make[2]: *** Waiting for unfinished jobs....
>
> make[2]: Leaving directory
> `/var/tmp/portage/glibc-2.3.5-r2/work/glibc-2.3.5/iconvdata'
>
> make[1]: *** [iconvdata/others] Error 2
>
> make[1]: Leaving directory
> `/var/tmp/portage/glibc-2.3.5-r2/work/glibc-2.3.5'
>
> make: *** [all] Error 2
>
>
>
> !!! ERROR: sys-libs/glibc-2.3.5-r2 failed.
>
> !!! Function toolchain-glibc_src_compile, Line 226, Exitcode 2
>
> !!! (no error message)
>
> !!! If you need support, post the topmost build error, NOT this status
> message.
>
>
>
>
>
>
>
> Any help appreciated.
>
>
>
>
>

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