Gentoo Archives: gentoo-science

From: Thomas Kahle <tomka@g.o>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] World updates with sage installed - portage bug?
Date: Sat, 02 Jun 2012 00:03:31
Message-Id: 20120601211358.GK22017@schlaumatte.ethz.ch
In Reply to: Re: [gentoo-science] World updates with sage installed - portage bug? by Francois Bissey
On 07:26 Sat 02 Jun 2012, Francois Bissey wrote:
> On Fri, 01 Jun 2012 11:52:24 Thomas Kahle wrote: > > Hi, > > > > now that I have sage-on-gentoo installed I can't do world updates with > > the -D option anymore. Looks like a portage quirk to me. > > > > There seem to be at least two problems: > > > > I have sci-mathematics/singular in my world file and the -D option > > forces portage to think that I insist on the latest version. Therefore > > it collides with sage-on-gentoo insisting on 3.1.3: > > > > sci-mathematics/singular:0 > > > > (sci-mathematics/singular-3.1.3.3::gentoo, installed) pulled in by > > ~sci-mathematics/singular-3.1.3.3 required by > > (sci-mathematics/sage-5.0-r1::sage-on-gentoo, installed) > > > > (sci-mathematics/singular-3.1.4-r1::gentoo, ebuild scheduled for merge) > > pulled in by (no parents that aren't satisfied by other packages in this > > slot) > > > > > > There also is an eselect issue. I don't know why, but eselect-blas and > > eselect-lapack are pulled in, although blocked by the new gsl: > > > > [blocks B ] app-admin/eselect-blas ("app-admin/eselect-blas" is > > blocking sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) [blocks B > > ] app-admin/eselect-lapack ("app-admin/eselect-lapack" is blocking > > sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) > > > > However, without the -D option I just get a warning: > > > > WARNING: One or more updates have been skipped due to a dependency conflict: > > > > sci-mathematics/singular:0 > > > > (sci-mathematics/singular-3.1.4-r1::gentoo, ebuild scheduled for merge) > > conflicts with ~sci-mathematics/singular-3.1.3.3 required by > > (sci-mathematics/sage-5.0-r1::sage-on-gentoo, installed) > > > > > > Any ideas? Shall I carry this to the portage mailing list? > > Cheers, > We need to know what pulls these eselect modules. What is the portage > output when you add the "t" option. It should show what wants what.
Goes back to dev-lang/R and sci-libs/superlu. My setup has superlu stable, but R keyworded ~amd64 the entire slot. [ebuild U ~] sci-mathematics/singular-3.1.4-r1 [3.1.3.3] USE="boost doc emacs python%* readline -examples -test" 0 kB [nomerge ] dev-lang/R-2.15.0 USE="X bash-completion cairo doc java jpeg lapack nls openmp perl png readline tiff tk -icu -minimal -profile -static-libs" [nomerge ] virtual/lapack-3.1 [nomerge ] sci-libs/lapack-reference-3.1.1-r1 USE="-doc" [ebuild N ] app-admin/eselect-lapack-0.1 0 kB [nomerge ] sci-mathematics/sage-5.0-r1::sage-on-gentoo USE="latex -testsuite" [nomerge ] sci-libs/scipy-0.9.0-r1 USE="-doc -umfpack" [nomerge ] sci-libs/superlu-4.1-r1 USE="-doc -examples -static-libs -test" [nomerge ] virtual/blas-1.0 [nomerge ] sci-libs/blas-reference-20070226 USE="-doc" [ebuild N ] app-admin/eselect-blas-0.1 0 kB [nomerge ] sci-mathematics/sage-5.0-r1::sage-on-gentoo USE="latex -testsuite" [nomerge ] dev-python/sympy-0.7.1 USE="gtk latex opengl pdf png -doc -examples -imaging -ipython -mathml -pyglet -test -texmacs" [ebuild U ] dev-python/pexpect-2.4::gentoo [2.0-r1::sage-on-gentoo] USE="-doc% -examples%" 0 kB [blocks B ] app-admin/eselect-lapack ("app-admin/eselect-lapack" is blocking sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) [blocks B ] app-admin/eselect-blas ("app-admin/eselect-blas" is blocking sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) Hope this helps, Cheers, Thomas -- Thomas Kahle http://dev.gentoo.org/~tomka/

Attachments

File name MIME type
signature.asc application/pgp-signature

Replies

Subject Author
Re: [gentoo-science] World updates with sage installed - portage bug? Francois Bissey <fbissey@××××××××××××.nz>