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You obviously didn't read my last two emails. |
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|
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Francois |
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|
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On Sun, 15 Jun 2014 16:22:43 Bastian Löffler wrote: |
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> I still have this problem when updating to scipy-0.14.0. Ideas? |
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> |
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> Am 09.06.2014 20:41, schrieb Bastian Löffler: |
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> > Hi, |
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> > |
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> > this is |
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> > |
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> > /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/site.cf |
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> > g: |
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> > |
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> > [blas] |
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> > include_dirs = |
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> > library_dirs = :/usr/lib64 |
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> > blas_libs = |
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> > [lapack] |
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> > library_dirs = //opt/acml5.3.1/gfortran64/lib:/usr/lib64 |
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> > lapack_libs = acml |
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> > |
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> > Buliding numpy is ago. This is any scipy update. |
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> > |
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> > Am 09.06.2014 13:51, schrieb François Bissey: |
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> >> numpy not bumpy. Sorry for the noise. |
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> >> |
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> >> On 9/06/2014, at 23:42, François Bissey <frp.bissey@×××××.com> wrote: |
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> >>> Hi, |
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> >>> |
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> >>> Could you post the file: |
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> >>> /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/site. |
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> >>> cfg |
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> >>> for our perusal? You obviously managed to merge bumpy which |
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> >>> fundamentally |
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> >>> should have the exact same problem. |
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> >>> Was it just before scipy or a while ago? |
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> >>> |
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> >>> François |
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> >>> |
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> >>> On 9/06/2014, at 23:25, Bastian Löffler <Bastian_Loeffler@×××××.de> |
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wrote: |
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> >>>> Hi all, |
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> >>>> |
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> >>>> I can not build scipy 0.14.0 agaonst the currenct aclm since it |
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> >>>> complains a missing blas: |
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> >>>> |
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> >>>> numpy.distutils.system_info.BlasNotFoundError: |
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> >>>> Blas ( |
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> >>>> |
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> >>>> http://www.netlib.org/blas/ |
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> >>>> ) libraries not found. |
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> >>>> |
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> >>>> Directories to search for the libraries can be specified in the |
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> >>>> numpy/distutils/site.cfg file (section [blas]) or by setting |
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> >>>> the BLAS environment variable. |
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> >>>> |
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> >>>> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase): |
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> >>>> * (no error message) |
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> >>>> * |
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> >>>> * Call stack: |
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> >>>> * ebuild.sh, line 93: Called src_compile |
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> >>>> * environment, line 4075: Called distutils-r1_src_compile |
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> >>>> * environment, line 1421: Called _distutils-r1_run_foreach_impl |
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> >>>> 'python_compile' |
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> >>>> * environment, line 312: Called python_parallel_foreach_impl |
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> >>>> 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 3808: Called multibuild_parallel_foreach_variant |
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> >>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 2855: Called multibuild_foreach_variant |
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> >>>> '_multibuild_parallel' '_python_multibuild_wrapper' |
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> >>>> 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 2798: Called _multibuild_run |
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> >>>> '_multibuild_parallel' '_python_multibuild_wrapper' |
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> >>>> 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 2796: Called _multibuild_parallel |
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> >>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 2846: Called _python_multibuild_wrapper |
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> >>>> 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 914: Called distutils-r1_run_phase |
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> >>>> 'python_compile' |
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> >>>> * environment, line 1412: Called python_compile |
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> >>>> * environment, line 3315: Called distutils-r1_python_compile |
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> >>>> 'config_fc' '--noopt' '--noarch' |
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> >>>> * environment, line 1292: Called esetup.py 'build' 'config_fc' |
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> >>>> '--noopt' '--noarch' |
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> >>>> * environment, line 1862: Called die |
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> >>>> * The specific snippet of code: |
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> >>>> * "${@}" || die |
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> >>>> * |
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> >>>> * If you need support, post the output of `emerge --info |
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> >>>> '=sci-libs/scipy-0.14.0::gentoo'`, |
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> >>>> * the complete build log and the output of `emerge -pqv |
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> >>>> '=sci-libs/scipy-0.14.0::gentoo'`. |
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> >>>> * The complete build log is located at |
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> >>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'. |
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> >>>> * The ebuild environment file is located at |
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> >>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'. |
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> >>>> * Working directory: |
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> >>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7' |
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> >>>> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0' |
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> >>>> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) - |
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> >>>> No such process |
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> >>>> blas_opt_info: |
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> >>>> |
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> >>>> system_info: |
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> >>>> NOT AVAILABLE |
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> >>>> |
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> >>>> blas_info: |
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> >>>> libraries not found in ['/usr/lib64'] |
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> >>>> NOT AVAILABLE |
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> >>>> |
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> >>>> blas_src_info: |
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> >>>> NOT AVAILABLE |
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> >>>> |
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> >>>> /usr/lib64/python3.3/distutils/dist.py:258: UserWarning: Unknown |
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> >>>> distribution option: 'test_suite' |
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> >>>> |
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> >>>> warnings.warn(msg) |
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> >>>> |
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> >>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1511: |
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> >>>> |
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> >>>> UserWarning: |
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> >>>> Atlas ( |
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> >>>> |
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> >>>> http://math-atlas.sourceforge.net/ |
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> >>>> ) libraries not found. |
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> >>>> |
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> >>>> Directories to search for the libraries can be specified in the |
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> >>>> numpy/distutils/site.cfg file (section [atlas]) or by setting |
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> >>>> the ATLAS environment variable. |
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> >>>> |
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> >>>> warnings.warn(AtlasNotFoundError.__doc__) |
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> >>>> |
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> >>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:566: |
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> >>>> UserWarning: Specified path is invalid. |
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> >>>> |
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> >>>> warnings.warn('Specified path %s is invalid.' % d) |
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> >>>> |
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> >>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1520: |
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> >>>> |
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> >>>> UserWarning: |
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> >>>> Blas ( |
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> >>>> |
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> >>>> http://www.netlib.org/blas/ |
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> >>>> ) libraries not found. |
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> >>>> |
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> >>>> Directories to search for the libraries can be specified in the |
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> >>>> numpy/distutils/site.cfg file (section [blas]) or by setting |
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> >>>> the BLAS environment variable. |
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> >>>> |
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> >>>> warnings.warn(BlasNotFoundError.__doc__) |
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> >>>> |
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> >>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1523: |
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> >>>> |
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> >>>> UserWarning: |
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> >>>> Blas ( |
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> >>>> |
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> >>>> http://www.netlib.org/blas/ |
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> >>>> ) sources not found. |
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> >>>> |
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> >>>> Directories to search for the sources can be specified in the |
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> >>>> numpy/distutils/site.cfg file (section [blas_src]) or by setting |
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> >>>> the BLAS_SRC environment variable. |
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> >>>> |
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> >>>> warnings.warn(BlasSrcNotFoundError.__doc__) |
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> >>>> |
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> >>>> Traceback (most recent call last): |
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> >>>> File "setup.py", line 237, in <module> |
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> >>>> |
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> >>>> setup_package() |
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> >>>> |
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> >>>> File "setup.py", line 234, in setup_package |
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> >>>> |
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> >>>> setup(**metadata) |
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> >>>> |
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> >>>> File "/usr/lib64/python3.3/site-packages/numpy/distutils/core.py", |
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> >>>> |
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> >>>> line 135, in setup |
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> >>>> |
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> >>>> config = configuration() |
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> >>>> |
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> >>>> File "setup.py", line 173, in configuration |
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> >>>> |
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> >>>> config.add_subpackage('scipy') |
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> >>>> |
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> >>>> File |
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> >>>> |
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> >>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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> >>>> 966, in add_subpackage |
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> >>>> |
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> >>>> caller_level = 2) |
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> >>>> |
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> >>>> File |
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> >>>> |
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> >>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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> >>>> 935, in get_subpackage |
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> >>>> |
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> >>>> caller_level = caller_level + 1) |
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> >>>> |
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> >>>> File |
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> >>>> |
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> >>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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> >>>> 872, in _get_configuration_from_setup_py |
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> >>>> |
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> >>>> config = setup_module.configuration(*args) |
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> >>>> |
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> >>>> File "scipy/setup.py", line 12, in configuration |
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> >>>> |
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> >>>> config.add_subpackage('integrate') |
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> >>>> |
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> >>>> File |
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> >>>> |
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> >>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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> >>>> 966, in add_subpackage |
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> >>>> |
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> >>>> caller_level = 2) |
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> >>>> |
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> >>>> File |
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> >>>> |
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> >>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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> >>>> 935, in get_subpackage |
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> >>>> |
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> >>>> caller_level = caller_level + 1) |
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> >>>> |
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> >>>> File |
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> >>>> |
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> >>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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> >>>> 872, in _get_configuration_from_setup_py |
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> >>>> |
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> >>>> config = setup_module.configuration(*args) |
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> >>>> |
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> >>>> File "scipy/integrate/setup.py", line 12, in configuration |
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> >>>> |
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> >>>> blas_opt = get_info('blas_opt',notfound_action=2) |
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> >>>> |
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> >>>> File |
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> >>>> |
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> >>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", |
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> >>>> line 340, in get_info |
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> >>>> |
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> >>>> return cl().get_info(notfound_action) |
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> >>>> |
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> >>>> File |
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> >>>> |
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> >>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", |
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> >>>> line 499, in get_info |
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> >>>> |
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> >>>> raise self.notfounderror(self.notfounderror.__doc__) |
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> >>>> |
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> >>>> numpy.distutils.system_info.BlasNotFoundError: |
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> >>>> Blas ( |
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> >>>> |
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> >>>> http://www.netlib.org/blas/ |
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> >>>> ) libraries not found. |
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> >>>> |
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> >>>> Directories to search for the libraries can be specified in the |
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> >>>> numpy/distutils/site.cfg file (section [blas]) or by setting |
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> >>>> the BLAS environment variable. |
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> >>>> |
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> >>>> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase): |
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> >>>> * (no error message) |
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> >>>> * |
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> >>>> * Call stack: |
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> >>>> * ebuild.sh, line 93: Called src_compile |
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> >>>> * environment, line 4075: Called distutils-r1_src_compile |
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> >>>> * environment, line 1421: Called _distutils-r1_run_foreach_impl |
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> >>>> 'python_compile' |
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> >>>> * environment, line 312: Called python_parallel_foreach_impl |
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> >>>> 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 3808: Called multibuild_parallel_foreach_variant |
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> >>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 2855: Called multibuild_foreach_variant |
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> >>>> '_multibuild_parallel' '_python_multibuild_wrapper' |
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> >>>> 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 2798: Called _multibuild_run |
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> >>>> '_multibuild_parallel' '_python_multibuild_wrapper' |
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> >>>> 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 2796: Called _multibuild_parallel |
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> >>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 2846: Called _python_multibuild_wrapper |
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> >>>> 'distutils-r1_run_phase' 'python_compile' |
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> >>>> * environment, line 914: Called distutils-r1_run_phase |
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> >>>> 'python_compile' |
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> >>>> * environment, line 1412: Called python_compile |
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> >>>> * environment, line 3315: Called distutils-r1_python_compile |
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> >>>> 'config_fc' '--noopt' '--noarch' |
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> >>>> * environment, line 1292: Called esetup.py 'build' 'config_fc' |
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> >>>> '--noopt' '--noarch' |
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> >>>> * environment, line 1862: Called die |
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> >>>> * The specific snippet of code: |
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> >>>> * "${@}" || die |
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> >>>> * |
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> >>>> * If you need support, post the output of `emerge --info |
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> >>>> '=sci-libs/scipy-0.14.0::gentoo'`, |
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> >>>> * the complete build log and the output of `emerge -pqv |
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> >>>> '=sci-libs/scipy-0.14.0::gentoo'`. |
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> >>>> * The complete build log is located at |
300 |
> >>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'. |
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> >>>> * The ebuild environment file is located at |
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> >>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'. |
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> >>>> * Working directory: |
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> >>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python3_3' |
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> >>>> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0' |
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> >>>> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) - |
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> >>>> No such process |
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> >>>> |
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> >>>>>>> Failed to emerge sci-libs/scipy-0.14.0, Log file: |